Gene: AT5G06140
     


Gene description


TAIR ID: AT5G06140

Short description: sorting nexin 1

Pathogen responsiveness: -2.03

General responsiveness: -2.55

Orthologous


Rice:

OS01G0862300   OS05G0346100  

Maize:

GRMZM5G839592  

Wheat: No orthologous gene

GO biological process


endosome to lysosome transport, vesicle organization, positive gravitropism, protein targeting to vacuole, root development, intracellular signal transduction, Golgi to vacuole transport, auxin homeostasis, endocytosis


GO cellular component


chloroplast, late endosome membrane, Golgi apparatus, endosome, cytosol, multivesicular body, intracellular membrane-bounded organelle, membrane, extrinsic component of membrane


GO molecular function


protein binding, phosphatidylinositol binding


Protein domain


PfamPF00787, PX domain
PfamPF09325, Vps5 C terminal like
SMARTSM00312, PX

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G13790, AT3G14230

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 11 (Top20%)

click to view PPI network

Differentially expressed condition


3 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h1.581.74E-05
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.561.09E-09
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.891.87E-11






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