Gene: AT5G05140
     

Gene description


TAIR ID: AT5G05140

Short description: Transcription elongation factor (TFIIS) family protein

Pathogen responsiveness: -0.30

General responsiveness: -0.13

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G087451  

Wheat:

TA.21413.1.S1_AT  TA.21413.1.S1_A_AT  


GO biological process


regulation of transcription, DNA-templated, translational elongation


GO cellular component


nucleus


GO molecular function


translation elongation factor activity


Protein domain


PfamPF08711, TFIIS helical bundle-like domain
SMARTSM00509, TFS2N

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G24260

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


14 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d-1.642.32E-04
GSE17464Laer, controlLaer, Flg22 1 h1.583.27E-04
GSE17464Penta, controlPenta, Flg22 2 h1.573.58E-04
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h2.012.49E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h2.861.10E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.604.85E-08
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h2.113.17E-13
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h1.964.56E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h1.902.04E-12
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.651.02E-11
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h1.623.89E-12
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h2.471.91E-02
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h1.802.13E-02
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h1.807.58E-07






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