gene detail

Gene description

TAIR ID: AT5G03240

Short description: polyubiquitin 3

Pathogen responsiveness: -0.57

General responsiveness: 0.22

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

GO biological process

response to UV-B, ubiquitin-dependent protein catabolic process, cellular protein modification process

GO cellular component

vacuole, intracellular, nucleus

GO molecular function

unkown

Protein domain

Pfam	PF00240, Ubiquitin family
SMART	SM00213, UBQ

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G38250, AT4G18770

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1330 (Top5%)

Coexpression network

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	1.60	5.40E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	2.24	1.77E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.91	1.17E-05
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	3.21	7.89E-11
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	3.22	5.79E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	3.78	3.23E-12
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	4.05	5.07E-13
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	1.68	1.42E-05
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.67	1.02E-10