gene detail

Gene description

TAIR ID: AT4G38680

Short description: glycine rich protein 2

Pathogen responsiveness: -1.40

General responsiveness: -1.25

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

response to cold, cold acclimation, DNA duplex unwinding, regulation of transcription, DNA-templated, regulation of cellular respiration, stamen development, response to desiccation, vegetative to reproductive phase transition of meristem, response to abscisic acid, response to water deprivation, seed development

GO cellular component

plasma membrane, cytoplasm, nucleolus, cytosol, nucleus

GO molecular function

zinc ion binding, mRNA binding, double-stranded DNA binding

Protein domain

Pfam	PF00098, Zinc knuckle
Pfam	PF00313, 'Cold-shock' DNA-binding domain
SMART	SM00357, CSP
SMART	SM00343, ZnF_C2HC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.65	6.12E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.16	1.44E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.70	7.32E-09
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.55	3.17E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.50	4.80E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.78	3.44E-09
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.53	7.29E-10
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.87	3.52E-12