gene detail

Gene description

TAIR ID: AT4G37230

Short description: Photosystem II manganese-stabilising protein (PsbO) family

Pathogen responsiveness: -1.97

General responsiveness: -4.56

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

photosystem II stabilization, photosynthesis

GO cellular component

extrinsic component of membrane, integral component of membrane, photosystem II oxygen evolving complex, chloroplast

GO molecular function

calcium ion binding

Protein domain

Pfam	PF01716, Manganese-stabilising protein / photosystem II polypeptide

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G16857, AT4G16110, AT5G11260, AT5G41315

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE56094_WT_HRPA- view
GSE45212_MED14_PSTDC3000_AVRRPT2 view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ler0, WT, control	Ler0, WT, TEV 21 d	-1.78	1.26E-02
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.77	2.45E-08
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.06	3.12E-09
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.63	3.00E-11
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	-1.68	7.38E-08