gene detail

Gene description

TAIR ID: AT4G36690

Short description: U2 snRNP auxilliary factor, large subunit, splicing factor

Pathogen responsiveness: -2.68

General responsiveness: -2.47

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

defense response to bacterium, mRNA splicing, via spliceosome, mRNA processing

GO cellular component

nucleus, U2-type prespliceosome, nuclear speck, commitment complex, U2AF

GO molecular function

protein binding, poly-pyrimidine tract binding, pre-mRNA 3'-splice site binding

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 16 (Top20%)

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.61	8.00E-03