gene detail

Gene description

TAIR ID: AT4G36020

Short description: cold shock domain protein 1

Pathogen responsiveness: -2.29

General responsiveness: -2.37

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

DNA duplex unwinding, response to salt stress, response to cold, RNA secondary structure unwinding, response to water deprivation, cold acclimation, regulation of transcription, DNA-templated

GO cellular component

unkown

GO molecular function

DNA binding, zinc ion binding

Protein domain

Pfam	PF00313, 'Cold-shock' DNA-binding domain
Pfam	PF00098, Zinc knuckle
SMART	SM00357, CSP
SMART	SM00343, ZnF_C2HC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G66600, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, WT, water 4 h	Col, WT, Flg22 4 h	1.84	4.34E-02