gene detail

Gene description

TAIR ID: AT4G32890

Short description: GATA transcription factor 9

Pathogen responsiveness: -1.66

General responsiveness: -0.54

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

cell differentiation, circadian rhythm, response to light stimulus

GO cellular component

nucleus, transcription factor complex

GO molecular function

RNA polymerase II regulatory region sequence-specific DNA binding, chromatin binding, transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding, RNA polymerase II transcription factor binding, transcription factor activity, sequence-specific DNA binding, zinc ion binding

Protein domain

Pfam	PF00320, GATA zinc finger
SMART	SM00401, ZnF_GATA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT2G38250, AT4G18770

Target:
AT3G18660

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.15	7.37E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.77	1.70E-02
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.59	6.35E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.60	2.45E-12
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.51	3.77E-03