Gene: AT4G30200
     


Gene description


TAIR ID: AT4G30200

Short description: vernalization5/VIN3-like

Pathogen responsiveness: -1.73

General responsiveness: -2.05

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G425774  

Wheat:

TA.7238.2.S1_AT  


GO biological process


regulation of transcription, DNA-templated, regulation of short-day photoperiodism, flowering, transcription, response to cold, positive regulation of histone H3-K9 dimethylation, circadian regulation of gene expression, vegetative to reproductive phase transition of meristem, flower development


GO cellular component


nucleus, chromatin silencing complex, plasmodesma


GO molecular function


protein binding, metal ion binding, identical protein binding, DNA binding, methylated histone binding


Protein domain


PfamPF07227, PHD - plant homeodomain finger protein

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G24260, AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


4 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.719.83E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.746.45E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.733.97E-10
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.552.13E-02






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