Gene: AT4G20830
     

Gene description


TAIR ID: AT4G20830

Short description: FAD-binding Berberine family protein

Pathogen responsiveness: 1.43

General responsiveness: 0.77

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


response to oxidative stress, oxidation-reduction process


GO cellular component


plasma membrane, apoplast, plant-type cell wall, cytosol, vacuole, anchored component of membrane, mitochondrion, plasmodesma, chloroplast


GO molecular function


flavin adenine dinucleotide binding, electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors


Protein domain


PfamPF08031, Berberine and berberine like
PfamPF01565, FAD binding domain

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G24260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


62 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, WT, water 4 hCol, WT, Flg22 4 h2.881.80E-02
GSE12856Col, WT, controlCol, WT, Bg h2.062.21E-04
GSE12856Col, ataf1, controlCol, ataf1, Bg h2.542.90E-05
GSE13739Col, WT, control 7 dCol, WT, G.orontii 7 d2.198.25E-11
GSE13739Col, eds, control 7 dCol, eds, G.orontii 7 d1.935.21E-09
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d-1.582.55E-04
GSE17464Laer, controlLaer, Flg22 1 h1.995.27E-06
GSE17464Laer, controlLaer, Flg22 2 h1.961.26E-05
GSE17464Penta, controlPenta, Flg22 2 h1.948.15E-06
GSE17464Penta, controlPenta, Flg22 2 h1.698.91E-05
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h1.574.56E-05
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h1.671.34E-05
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h1.544.20E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h3.225.36E-12
GSE2538Col, WT, controlCol, WT, crab shell chitin 30 min1.952.06E-05
GSE2538Col, WT, controlCol, WT, purified chitin octamer 30 min1.794.40E-05
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt21.928.17E-04
GSE40544Col, WT, controlCol, WT, PstDC3000 EV2.331.27E-04
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 AvrRpt21.928.50E-04
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h2.452.04E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h2.408.80E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h2.823.42E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h3.137.56E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h2.003.79E-09
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h3.701.52E-14
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h3.122.31E-13
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h4.298.91E-16
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h3.406.13E-14
GSE4746Col, WT, water 30 minCol, WT, chitooctaose 30 min1.552.59E-04
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h2.791.34E-03
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h3.131.65E-04
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h2.653.38E-11
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h2.801.35E-11
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h2.683.22E-06
GSE5520Col, WT, control 10 hCol, WT, Cor- hrpS- 10 h1.963.45E-03
GSE5520Col, WT, control 24 hCol, WT, PsDC3118 Cor- 24 h1.911.15E-03
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h1.741.37E-03
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h1.918.45E-08
GSE56094Col, WT, control 10 hCol, WT, hrpA- 10 h1.553.97E-05
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h1.805.60E-07
GSE56094Col, WT, control 11 hCol, WT, hrpA- 11 h1.952.71E-07
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h1.815.22E-07
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h2.115.47E-09
GSE56094Col, WT, control 6 hCol, WT, PstDC3000 6 h1.871.02E-06
GSE56094Col, WT, control 6 hCol, WT, hrpA- 6 h1.605.99E-05
GSE56094Col, WT, control 7 hCol, WT, hrpA- 7 h2.052.44E-07
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h1.618.69E-06
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h1.592.13E-05
GSE5615Col, WT, GST 4 hCol, WT, GST+NPP1 4 h1.631.54E-06
GSE5615Col, WT, water 4 hCol, WT, Flg22 4 h2.051.26E-08
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h2.801.21E-11
GSE5616Col, WT, water 12 hCol, WT, P. infestans 12 h1.673.73E-03
GSE5616Col, WT, water 6 hCol, WT, P. infestans 6 h2.702.42E-05
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h2.302.13E-02
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h2.561.87E-05
GSE8319Col, WT, controlCol, WT, chitooctaose 30 min1.553.94E-09
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h3.603.22E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h3.904.88E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min2.251.29E-02
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 2-4 h3.229.48E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h3.727.77E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 90-105 min2.144.79E-03






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