gene detail

Gene description

TAIR ID: AT4G20360

Short description: RAB GTPase homolog E1B

Pathogen responsiveness: -1.25

General responsiveness: 1.43

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G106061

Wheat:

TA.717.1.S1_AT

GO biological process

translational elongation

GO cellular component

chloroplast thylakoid membrane, chloroplast stroma, chloroplast envelope, chloroplast, chloroplast thylakoid, nucleus, plastid, nucleolus, apoplast, nucleoid, membrane

GO molecular function

protein binding, translation elongation factor activity, GTP binding, GTPase activity

Protein domain

Pfam	PF00009, Elongation factor Tu GTP binding domain
Pfam	PF03143, Elongation factor Tu C-terminal domain
Pfam	PF03144, Elongation factor Tu domain 2

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G38250, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 12 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.28	8.95E-10
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.59	4.05E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.34	3.40E-09
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.71	1.36E-05
GSE56094	Col, WT, control 4 h	Col, WT, PstDC3000 4 h	-1.62	1.37E-04
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.56	4.32E-05