GO Enrichment Analysis of Co-expressed Genes with
AT4G20360
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 4 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 5 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 6 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 7 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 8 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 6.45E-07 |
| 9 | GO:0015979: photosynthesis | 6.44E-06 |
| 10 | GO:0010236: plastoquinone biosynthetic process | 1.80E-05 |
| 11 | GO:0009658: chloroplast organization | 3.57E-05 |
| 12 | GO:1901259: chloroplast rRNA processing | 3.84E-05 |
| 13 | GO:0009657: plastid organization | 8.55E-05 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.12E-04 |
| 15 | GO:0010442: guard cell morphogenesis | 1.12E-04 |
| 16 | GO:1904964: positive regulation of phytol biosynthetic process | 1.12E-04 |
| 17 | GO:0042371: vitamin K biosynthetic process | 1.12E-04 |
| 18 | GO:0005991: trehalose metabolic process | 1.12E-04 |
| 19 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.12E-04 |
| 20 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.12E-04 |
| 21 | GO:0019684: photosynthesis, light reaction | 1.78E-04 |
| 22 | GO:0018026: peptidyl-lysine monomethylation | 2.61E-04 |
| 23 | GO:0060151: peroxisome localization | 2.61E-04 |
| 24 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.61E-04 |
| 25 | GO:0010024: phytochromobilin biosynthetic process | 2.61E-04 |
| 26 | GO:0052541: plant-type cell wall cellulose metabolic process | 2.61E-04 |
| 27 | GO:0051645: Golgi localization | 2.61E-04 |
| 28 | GO:0034755: iron ion transmembrane transport | 2.61E-04 |
| 29 | GO:0048467: gynoecium development | 2.68E-04 |
| 30 | GO:0010020: chloroplast fission | 2.68E-04 |
| 31 | GO:0006954: inflammatory response | 4.32E-04 |
| 32 | GO:0090436: leaf pavement cell development | 4.32E-04 |
| 33 | GO:0006788: heme oxidation | 4.32E-04 |
| 34 | GO:0051646: mitochondrion localization | 4.32E-04 |
| 35 | GO:0006168: adenine salvage | 6.19E-04 |
| 36 | GO:0043572: plastid fission | 6.19E-04 |
| 37 | GO:0006166: purine ribonucleoside salvage | 6.19E-04 |
| 38 | GO:0016556: mRNA modification | 6.19E-04 |
| 39 | GO:0006546: glycine catabolic process | 8.23E-04 |
| 40 | GO:0010107: potassium ion import | 8.23E-04 |
| 41 | GO:0009791: post-embryonic development | 8.42E-04 |
| 42 | GO:0098719: sodium ion import across plasma membrane | 1.04E-03 |
| 43 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.04E-03 |
| 44 | GO:0044209: AMP salvage | 1.04E-03 |
| 45 | GO:0050665: hydrogen peroxide biosynthetic process | 1.27E-03 |
| 46 | GO:0032973: amino acid export | 1.27E-03 |
| 47 | GO:0000741: karyogamy | 1.27E-03 |
| 48 | GO:0009228: thiamine biosynthetic process | 1.27E-03 |
| 49 | GO:0017148: negative regulation of translation | 1.52E-03 |
| 50 | GO:0010189: vitamin E biosynthetic process | 1.52E-03 |
| 51 | GO:0009854: oxidative photosynthetic carbon pathway | 1.52E-03 |
| 52 | GO:0042372: phylloquinone biosynthetic process | 1.52E-03 |
| 53 | GO:0009772: photosynthetic electron transport in photosystem II | 1.78E-03 |
| 54 | GO:0043090: amino acid import | 1.78E-03 |
| 55 | GO:0010078: maintenance of root meristem identity | 2.06E-03 |
| 56 | GO:0055075: potassium ion homeostasis | 2.06E-03 |
| 57 | GO:0070413: trehalose metabolism in response to stress | 2.06E-03 |
| 58 | GO:0010204: defense response signaling pathway, resistance gene-independent | 2.35E-03 |
| 59 | GO:0043562: cellular response to nitrogen levels | 2.35E-03 |
| 60 | GO:0017004: cytochrome complex assembly | 2.35E-03 |
| 61 | GO:0080144: amino acid homeostasis | 2.66E-03 |
| 62 | GO:0090333: regulation of stomatal closure | 2.66E-03 |
| 63 | GO:0051453: regulation of intracellular pH | 2.97E-03 |
| 64 | GO:0006879: cellular iron ion homeostasis | 3.65E-03 |
| 65 | GO:0009684: indoleacetic acid biosynthetic process | 3.65E-03 |
| 66 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.65E-03 |
| 67 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.72E-03 |
| 68 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.00E-03 |
| 69 | GO:0009767: photosynthetic electron transport chain | 4.36E-03 |
| 70 | GO:0010588: cotyledon vascular tissue pattern formation | 4.36E-03 |
| 71 | GO:0030048: actin filament-based movement | 4.36E-03 |
| 72 | GO:0010143: cutin biosynthetic process | 4.74E-03 |
| 73 | GO:0019853: L-ascorbic acid biosynthetic process | 5.13E-03 |
| 74 | GO:0010030: positive regulation of seed germination | 5.13E-03 |
| 75 | GO:0009742: brassinosteroid mediated signaling pathway | 5.40E-03 |
| 76 | GO:0006071: glycerol metabolic process | 5.52E-03 |
| 77 | GO:0005992: trehalose biosynthetic process | 5.93E-03 |
| 78 | GO:0010026: trichome differentiation | 6.35E-03 |
| 79 | GO:0019915: lipid storage | 6.78E-03 |
| 80 | GO:0030245: cellulose catabolic process | 7.22E-03 |
| 81 | GO:0006730: one-carbon metabolic process | 7.22E-03 |
| 82 | GO:0009790: embryo development | 7.44E-03 |
| 83 | GO:0006012: galactose metabolic process | 7.67E-03 |
| 84 | GO:0009686: gibberellin biosynthetic process | 7.67E-03 |
| 85 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 8.60E-03 |
| 86 | GO:0080022: primary root development | 9.08E-03 |
| 87 | GO:0010087: phloem or xylem histogenesis | 9.08E-03 |
| 88 | GO:0042631: cellular response to water deprivation | 9.08E-03 |
| 89 | GO:0010197: polar nucleus fusion | 9.57E-03 |
| 90 | GO:0010182: sugar mediated signaling pathway | 9.57E-03 |
| 91 | GO:0009741: response to brassinosteroid | 9.57E-03 |
| 92 | GO:0010268: brassinosteroid homeostasis | 9.57E-03 |
| 93 | GO:0010154: fruit development | 9.57E-03 |
| 94 | GO:0009958: positive gravitropism | 9.57E-03 |
| 95 | GO:0006885: regulation of pH | 9.57E-03 |
| 96 | GO:0006814: sodium ion transport | 1.01E-02 |
| 97 | GO:0009646: response to absence of light | 1.01E-02 |
| 98 | GO:0048825: cotyledon development | 1.06E-02 |
| 99 | GO:0009851: auxin biosynthetic process | 1.06E-02 |
| 100 | GO:0006810: transport | 1.06E-02 |
| 101 | GO:0051301: cell division | 1.09E-02 |
| 102 | GO:0016132: brassinosteroid biosynthetic process | 1.11E-02 |
| 103 | GO:0032502: developmental process | 1.16E-02 |
| 104 | GO:0010090: trichome morphogenesis | 1.22E-02 |
| 105 | GO:0016125: sterol metabolic process | 1.27E-02 |
| 106 | GO:0006974: cellular response to DNA damage stimulus | 1.56E-02 |
| 107 | GO:0015995: chlorophyll biosynthetic process | 1.62E-02 |
| 108 | GO:0016049: cell growth | 1.68E-02 |
| 109 | GO:0018298: protein-chromophore linkage | 1.74E-02 |
| 110 | GO:0009832: plant-type cell wall biogenesis | 1.80E-02 |
| 111 | GO:0048527: lateral root development | 1.93E-02 |
| 112 | GO:0006839: mitochondrial transport | 2.25E-02 |
| 113 | GO:0055114: oxidation-reduction process | 2.29E-02 |
| 114 | GO:0032259: methylation | 2.40E-02 |
| 115 | GO:0010114: response to red light | 2.46E-02 |
| 116 | GO:0051707: response to other organism | 2.46E-02 |
| 117 | GO:0006629: lipid metabolic process | 2.51E-02 |
| 118 | GO:0009644: response to high light intensity | 2.60E-02 |
| 119 | GO:0006397: mRNA processing | 2.61E-02 |
| 120 | GO:0006855: drug transmembrane transport | 2.75E-02 |
| 121 | GO:0006486: protein glycosylation | 3.04E-02 |
| 122 | GO:0006417: regulation of translation | 3.27E-02 |
| 123 | GO:0043086: negative regulation of catalytic activity | 3.43E-02 |
| 124 | GO:0048367: shoot system development | 3.51E-02 |
| 125 | GO:0006396: RNA processing | 3.99E-02 |
| 126 | GO:0009735: response to cytokinin | 4.05E-02 |
| 127 | GO:0009845: seed germination | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 3 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0004033: aldo-keto reductase (NADP) activity | 6.75E-05 |
| 6 | GO:0005080: protein kinase C binding | 1.12E-04 |
| 7 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.12E-04 |
| 8 | GO:0004328: formamidase activity | 1.12E-04 |
| 9 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.12E-04 |
| 10 | GO:0051777: ent-kaurenoate oxidase activity | 1.12E-04 |
| 11 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.61E-04 |
| 12 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.61E-04 |
| 13 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 2.61E-04 |
| 14 | GO:0004047: aminomethyltransferase activity | 2.61E-04 |
| 15 | GO:0004312: fatty acid synthase activity | 2.61E-04 |
| 16 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 2.61E-04 |
| 17 | GO:0070402: NADPH binding | 4.32E-04 |
| 18 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 4.32E-04 |
| 19 | GO:0003999: adenine phosphoribosyltransferase activity | 6.19E-04 |
| 20 | GO:0003883: CTP synthase activity | 6.19E-04 |
| 21 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 6.19E-04 |
| 22 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 6.19E-04 |
| 23 | GO:0043023: ribosomal large subunit binding | 6.19E-04 |
| 24 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 6.19E-04 |
| 25 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 6.19E-04 |
| 26 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 6.19E-04 |
| 27 | GO:0016851: magnesium chelatase activity | 6.19E-04 |
| 28 | GO:0004392: heme oxygenase (decyclizing) activity | 8.23E-04 |
| 29 | GO:0008891: glycolate oxidase activity | 8.23E-04 |
| 30 | GO:0004659: prenyltransferase activity | 8.23E-04 |
| 31 | GO:0016279: protein-lysine N-methyltransferase activity | 8.23E-04 |
| 32 | GO:0004045: aminoacyl-tRNA hydrolase activity | 8.23E-04 |
| 33 | GO:0043495: protein anchor | 8.23E-04 |
| 34 | GO:0016846: carbon-sulfur lyase activity | 1.04E-03 |
| 35 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.04E-03 |
| 36 | GO:0016791: phosphatase activity | 1.08E-03 |
| 37 | GO:0015081: sodium ion transmembrane transporter activity | 1.27E-03 |
| 38 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.27E-03 |
| 39 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.27E-03 |
| 40 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.52E-03 |
| 41 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.52E-03 |
| 42 | GO:0042802: identical protein binding | 1.71E-03 |
| 43 | GO:0019899: enzyme binding | 1.78E-03 |
| 44 | GO:0008135: translation factor activity, RNA binding | 2.35E-03 |
| 45 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 2.66E-03 |
| 46 | GO:0004185: serine-type carboxypeptidase activity | 2.68E-03 |
| 47 | GO:0005381: iron ion transmembrane transporter activity | 2.97E-03 |
| 48 | GO:0047372: acylglycerol lipase activity | 3.65E-03 |
| 49 | GO:0015386: potassium:proton antiporter activity | 3.65E-03 |
| 50 | GO:0008378: galactosyltransferase activity | 4.00E-03 |
| 51 | GO:0003774: motor activity | 4.74E-03 |
| 52 | GO:0005528: FK506 binding | 5.93E-03 |
| 53 | GO:0004176: ATP-dependent peptidase activity | 6.78E-03 |
| 54 | GO:0003824: catalytic activity | 6.79E-03 |
| 55 | GO:0005215: transporter activity | 6.87E-03 |
| 56 | GO:0008810: cellulase activity | 7.67E-03 |
| 57 | GO:0022891: substrate-specific transmembrane transporter activity | 7.67E-03 |
| 58 | GO:0030570: pectate lyase activity | 7.67E-03 |
| 59 | GO:0003727: single-stranded RNA binding | 8.13E-03 |
| 60 | GO:0010181: FMN binding | 1.01E-02 |
| 61 | GO:0015385: sodium:proton antiporter activity | 1.22E-02 |
| 62 | GO:0008168: methyltransferase activity | 1.31E-02 |
| 63 | GO:0008483: transaminase activity | 1.33E-02 |
| 64 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.33E-02 |
| 65 | GO:0008237: metallopeptidase activity | 1.33E-02 |
| 66 | GO:0016168: chlorophyll binding | 1.50E-02 |
| 67 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.68E-02 |
| 68 | GO:0015238: drug transmembrane transporter activity | 1.80E-02 |
| 69 | GO:0004222: metalloendopeptidase activity | 1.86E-02 |
| 70 | GO:0003746: translation elongation factor activity | 2.06E-02 |
| 71 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.19E-02 |
| 72 | GO:0043621: protein self-association | 2.60E-02 |
| 73 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.75E-02 |
| 74 | GO:0003690: double-stranded DNA binding | 3.12E-02 |
| 75 | GO:0015171: amino acid transmembrane transporter activity | 3.27E-02 |
| 76 | GO:0016491: oxidoreductase activity | 3.36E-02 |
| 77 | GO:0008289: lipid binding | 3.48E-02 |
| 78 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.51E-02 |
| 79 | GO:0030599: pectinesterase activity | 3.75E-02 |
| 80 | GO:0003779: actin binding | 3.83E-02 |
| 81 | GO:0016887: ATPase activity | 3.87E-02 |
| 82 | GO:0016746: transferase activity, transferring acyl groups | 3.99E-02 |
| 83 | GO:0008026: ATP-dependent helicase activity | 4.08E-02 |
| 84 | GO:0016758: transferase activity, transferring hexosyl groups | 4.50E-02 |
| 85 | GO:0019843: rRNA binding | 4.59E-02 |
| 86 | GO:0016829: lyase activity | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.17E-11 |
| 2 | GO:0009570: chloroplast stroma | 1.14E-08 |
| 3 | GO:0009941: chloroplast envelope | 6.60E-06 |
| 4 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.12E-04 |
| 5 | GO:0080085: signal recognition particle, chloroplast targeting | 2.61E-04 |
| 6 | GO:0009654: photosystem II oxygen evolving complex | 4.13E-04 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 4.17E-04 |
| 8 | GO:0010007: magnesium chelatase complex | 4.32E-04 |
| 9 | GO:0042646: plastid nucleoid | 6.19E-04 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 8.52E-04 |
| 11 | GO:0009539: photosystem II reaction center | 2.35E-03 |
| 12 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.35E-03 |
| 13 | GO:0031977: thylakoid lumen | 2.47E-03 |
| 14 | GO:0042644: chloroplast nucleoid | 2.66E-03 |
| 15 | GO:0031969: chloroplast membrane | 2.88E-03 |
| 16 | GO:0016459: myosin complex | 3.30E-03 |
| 17 | GO:0009508: plastid chromosome | 4.36E-03 |
| 18 | GO:0030095: chloroplast photosystem II | 4.74E-03 |
| 19 | GO:0009706: chloroplast inner membrane | 5.09E-03 |
| 20 | GO:0042651: thylakoid membrane | 6.35E-03 |
| 21 | GO:0016020: membrane | 9.51E-03 |
| 22 | GO:0009522: photosystem I | 1.01E-02 |
| 23 | GO:0009523: photosystem II | 1.06E-02 |
| 24 | GO:0019898: extrinsic component of membrane | 1.06E-02 |
| 25 | GO:0046658: anchored component of plasma membrane | 1.17E-02 |
| 26 | GO:0009579: thylakoid | 1.23E-02 |
| 27 | GO:0009534: chloroplast thylakoid | 1.24E-02 |
| 28 | GO:0010319: stromule | 1.33E-02 |
| 29 | GO:0009295: nucleoid | 1.33E-02 |
| 30 | GO:0030529: intracellular ribonucleoprotein complex | 1.44E-02 |
| 31 | GO:0016021: integral component of membrane | 1.46E-02 |
| 32 | GO:0009536: plastid | 3.07E-02 |
| 33 | GO:0005789: endoplasmic reticulum membrane | 4.03E-02 |
| 34 | GO:0048046: apoplast | 4.04E-02 |
| 35 | GO:0005886: plasma membrane | 4.22E-02 |
| 36 | GO:0005618: cell wall | 4.57E-02 |
| 37 | GO:0005623: cell | 4.68E-02 |