gene detail

Gene description

TAIR ID: AT4G17720

Short description: RNA-binding (RRM/RBD/RNP motifs) family protein

Pathogen responsiveness: 0.35

General responsiveness: -2.28

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G102808

Wheat: No orthologous gene

GO biological process

response to cytokinin

GO cellular component

cytosol, nucleus

GO molecular function

unkown

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 10 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

26 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	2.20	1.10E-07
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	2.55	2.02E-08
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	1.65	6.29E-11
GSE17464	Laer, control	Laer, Flg22 1 h	1.84	2.47E-07
GSE17464	Laer, control	Laer, Flg22 2 h	2.00	2.17E-07
GSE17464	Penta, control	Penta, Flg22 2 h	1.55	6.97E-06
GSE17464	Penta, control	Penta, Flg22 2 h	1.85	6.27E-07
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.74	2.15E-06
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	1.57	2.78E-10
GSE18329	Col, wrky72_1, control	Col, wrky72_2, Hpa noco2 96 h	1.53	4.50E-10
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.03	1.19E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.63	2.07E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.86	7.44E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	3.15	1.64E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	3.54	3.35E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	3.75	1.12E-10
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.59	1.67E-09
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	2.30	2.78E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.80	9.86E-03
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	1.82	7.22E-09
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	1.98	1.52E-08
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.94	1.09E-02
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	1.96	2.47E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.92	4.57E-05
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 2-4 h	1.62	1.22E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	2.67	9.80E-05