Gene: AT4G16890
     

Gene description


TAIR ID: AT4G16890

Short description: disease resistance protein (TIR-NBS-LRR class), putative

Pathogen responsiveness: NA

General responsiveness: 0.24

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


response to auxin, defense response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway, signal transduction, incompatible interaction, defense response


GO cellular component


nucleus, endoplasmic reticulum, cytoplasm, cytosol, intracellular membrane-bounded organelle


GO molecular function


protein binding


Protein domain


PfamPF00931, NB-ARC domain
PfamPF01582, TIR domain
PfamPF07725, Leucine Rich Repeat
SMARTSM00255, TIR

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT4G36990, AT1G09770

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 5

click to view PPI network

Differentially expressed condition


4 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h2.162.31E-12
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h1.715.58E-07
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h1.801.67E-07
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h1.591.97E-06






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