Gene: AT4G16390
     

Gene description


TAIR ID: AT4G16390

Short description: pentatricopeptide (PPR) repeat-containing protein

Pathogen responsiveness: -0.49

General responsiveness: 0.27

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G128665  

Wheat: No orthologous gene

GO biological process


chloroplast RNA processing, positive regulation of translation, RNA modification, chloroplast organization


GO cellular component


chloroplast stroma, chloroplast


GO molecular function


endonuclease activity, nucleotide binding


Protein domain


PfamPF17177, Pentacotripeptide-repeat region of PROPR
PfamPF13041, PPR repeat family
PfamPF13812, Pentatricopeptide repeat domain
PfamPF01535, PPR repeat
SMARTSM00463, SMR

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


10 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, erf104 ko, water 4 hCol, erf104 ko, Flg22 4 h-1.876.88E-03
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 2 h-1.622.71E-03
GSE17464Penta, controlPenta, Flg22 2 h-1.822.46E-04
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-1.642.12E-04
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.629.34E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-1.754.70E-13
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.928.13E-13
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.824.37E-13
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.041.22E-11
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.654.61E-08






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