gene detail

Gene description

TAIR ID: AT4G16340

Short description: guanyl-nucleotide exchange factors;GTPase binding;GTP binding

Pathogen responsiveness: -0.66

General responsiveness: -1.95

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G462803

Wheat:

TA.7685.3.S1_AT

GO biological process

small GTPase mediated signal transduction, regulation of auxin mediated signaling pathway, vesicle-mediated transport, auxin-activated signaling pathway, multicellular organism development, regulation of actin polymerization or depolymerization, regulation of cytoskeleton organization, positive gravitropism, regulation of cell shape

GO cellular component

cytosol, plasma membrane, endoplasmic reticulum exit site, endoplasmic reticulum membrane, nucleus, extrinsic component of membrane

GO molecular function

protein binding, Rho guanyl-nucleotide exchange factor activity

Protein domain

Pfam	PF06920, Dock homology region 2
Pfam	PF14429, C2 domain in Dock180 and Zizimin proteins

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G16857, AT4G16110

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 18 (Top10%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

11 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.79	1.13E-06
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.71	7.57E-03
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.57	1.35E-11
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.63	7.62E-05
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.80	1.13E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.86	4.61E-15
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.76	1.70E-13
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.72	4.46E-13
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.58	7.31E-12
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.60	1.21E-11
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.64	9.48E-04