gene detail

Gene description

TAIR ID: AT4G14220

Short description: RING-H2 group F1A

Pathogen responsiveness: 0.04

General responsiveness: -2.49

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

protein polyubiquitination, proteasomal protein catabolic process, proteasome-mediated ubiquitin-dependent protein catabolic process, protein ubiquitination, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, microgametogenesis, regulation of cell cycle, megagametogenesis

GO cellular component

nucleus, membrane

GO molecular function

ubiquitin-protein transferase activity, protein binding, ubiquitin protein ligase activity, metal ion binding

Protein domain

Pfam	PF13639, Ring finger domain
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G18770, AT2G02820, AT5G61850, AT4G36990, AT1G14350

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

22 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	1.53	7.34E-07
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.83	1.02E-07
GSE17464	Laer, control	Laer, Flg22 1 h	1.58	7.66E-05
GSE17464	Penta, control	Penta, Flg22 2 h	1.77	1.08E-05
GSE17464	Penta, control	Penta, Flg22 2 h	1.52	1.35E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.69	4.55E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.33	6.39E-14
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.41	6.64E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.37	5.47E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.78	8.11E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.75	6.79E-15
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	2.19	1.95E-11
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.55	3.79E-09
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	2.78	2.11E-13
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	1.87	3.13E-10
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	1.87	1.63E-02
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	1.97	6.70E-10
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	1.84	1.35E-09
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.84	8.34E-03
GSE73351	Ws-4, map65_3, control	Ws-4, map65_3, H.ara Emwa1 3 d	1.61	5.59E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.09	2.35E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.94	4.38E-04