gene detail

Gene description

TAIR ID: AT4G14050

Short description: Pentatricopeptide repeat (PPR) superfamily protein

Pathogen responsiveness: -1.53

General responsiveness: -3.88

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G447535

Wheat: No orthologous gene

GO biological process

RNA modification, cytidine to uridine editing, mRNA processing

GO cellular component

membrane, intracellular membrane-bounded organelle, mitochondrion

GO molecular function

RNA binding, zinc ion binding, protein binding, endonuclease activity

Protein domain

Pfam	PF13041, PPR repeat family
Pfam	PF14432, DYW family of nucleic acid deaminases
Pfam	PF01535, PPR repeat

Metabolic pathway

PWY-3781: aerobic respiration (cytochrome c)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G14230

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2 view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	3.06	2.82E-04
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	2.83	6.23E-04
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	2.97	3.61E-04
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	3.80	1.26E-05
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.78	1.75E-02