gene detail

Gene description

TAIR ID: AT4G13930

Short description: serine hydroxymethyltransferase 4

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G078143

Wheat:

TA.18968.1.S1_S_AT TA.18968.1.S1_X_AT

GO biological process

tetrahydrofolate interconversion, glycine metabolic process, glycine biosynthetic process, L-serine metabolic process, circadian rhythm, response to cadmium ion

GO cellular component

cytoplasm, cytosol, membrane, plasma membrane, plasmodesma

GO molecular function

protein binding, glycine hydroxymethyltransferase activity, pyridoxal phosphate binding

Protein domain

Pfam	PF00464, Serine hydroxymethyltransferase

Metabolic pathway

PWY-181: photorespiration
PWY-3841: folate transformations II
GLYSYN2-PWY: glycine biosynthesis
PWY-2161: folate polyglutamylation

KEGG pathway

PATH:ath01200: Carbon metabolism
PATH:ath01230: Biosynthesis of amino acids
PATH:ath00630: Glyoxylate and dicarboxylate metabolism
PATH:ath00260: Glycine, serine and threonine metabolism
PATH:ath00460: Cyanoamino acid metabolism
PATH:ath00670: One carbon pool by folate

Transcriptional regulation

Regulator:
AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2 view
GSE56094_WT_PSTDC3000 view

Differentially expressed condition

2 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.70	2.70E-02
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.18	6.50E-09