gene detail

Gene description

TAIR ID: AT4G03430

Short description: pre-mRNA splicing factor-related

Pathogen responsiveness: -1.91

General responsiveness: -1.08

Orthologous

Rice:

OS01G0263600 OS05G0289400 OS03G0308800 OS07G0644300

Maize:

GRMZM2G049902

Wheat:

TA.296.2.A1_AT TA.296.2.A1_A_AT

GO biological process

RNA-directed DNA methylation, mRNA splicing, via spliceosome, positive regulation of primary miRNA processing, seed germination, response to cold, spliceosomal tri-snRNP complex assembly, positive regulation of miRNA metabolic process

GO cellular component

nucleus, Cajal body, U4/U6 x U5 tri-snRNP complex, spliceosomal complex, catalytic step 2 spliceosome

GO molecular function

protein binding

Protein domain

Pfam	PF06424, PRP1 splicing factor, N-terminal
SMART	SM00386, HAT
SMART	SM00028, TPR

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT5G13790

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.75	2.47E-03