gene detail

Gene description

TAIR ID: AT4G02990

Short description: Mitochondrial transcription termination factor family protein

Pathogen responsiveness: -0.68

General responsiveness: 0.24

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G029933

Wheat: No orthologous gene

GO biological process

embryo development, transcription from plastid promoter, DNA-templated transcription, termination, rRNA transcription from plastid promoter, regulation of transcription, DNA-templated, chloroplast organization, RNA splicing, ribosome assembly, developmental process

GO cellular component

plastid, chloroplast, mitochondrion

GO molecular function

rRNA binding, double-stranded DNA binding, single-stranded RNA binding

Protein domain

Pfam	PF02536, mTERF
SMART	SM00733, Mterf

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G41315

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.62	3.03E-08
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.89	6.53E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.53	1.39E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.58	1.24E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.51	1.63E-11