Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G02990

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035884: arabinan biosynthetic process0.00E+00
2GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
3GO:0043972: histone H3-K23 acetylation0.00E+00
4GO:0080127: fruit septum development0.00E+00
5GO:0033206: meiotic cytokinesis0.00E+00
6GO:0090615: mitochondrial mRNA processing0.00E+00
7GO:0044154: histone H3-K14 acetylation0.00E+00
8GO:0045014: negative regulation of transcription by glucose0.00E+00
9GO:0033473: indoleacetic acid conjugate metabolic process0.00E+00
10GO:0090627: plant epidermal cell differentiation0.00E+00
11GO:0009606: tropism0.00E+00
12GO:0090322: regulation of superoxide metabolic process0.00E+00
13GO:0042793: transcription from plastid promoter8.62E-06
14GO:0010569: regulation of double-strand break repair via homologous recombination1.28E-05
15GO:0009734: auxin-activated signaling pathway2.04E-05
16GO:0009416: response to light stimulus4.96E-05
17GO:1900864: mitochondrial RNA modification1.57E-04
18GO:2000038: regulation of stomatal complex development1.57E-04
19GO:0080188: RNA-directed DNA methylation2.76E-04
20GO:0009913: epidermal cell differentiation3.38E-04
21GO:2000377: regulation of reactive oxygen species metabolic process3.69E-04
22GO:2000033: regulation of seed dormancy process4.50E-04
23GO:0048657: anther wall tapetum cell differentiation5.40E-04
24GO:1903866: palisade mesophyll development5.40E-04
25GO:0090063: positive regulation of microtubule nucleation5.40E-04
26GO:0010342: endosperm cellularization5.40E-04
27GO:0034757: negative regulation of iron ion transport5.40E-04
28GO:0009729: detection of brassinosteroid stimulus5.40E-04
29GO:1905039: carboxylic acid transmembrane transport5.40E-04
30GO:1905200: gibberellic acid transmembrane transport5.40E-04
31GO:0080112: seed growth5.40E-04
32GO:0043971: histone H3-K18 acetylation5.40E-04
33GO:0006955: immune response5.77E-04
34GO:0046620: regulation of organ growth7.18E-04
35GO:0009938: negative regulation of gibberellic acid mediated signaling pathway7.18E-04
36GO:0009658: chloroplast organization7.21E-04
37GO:0010271: regulation of chlorophyll catabolic process1.16E-03
38GO:0009662: etioplast organization1.16E-03
39GO:1900033: negative regulation of trichome patterning1.16E-03
40GO:2000071: regulation of defense response by callose deposition1.16E-03
41GO:0080009: mRNA methylation1.16E-03
42GO:2000123: positive regulation of stomatal complex development1.16E-03
43GO:1901529: positive regulation of anion channel activity1.16E-03
44GO:0033566: gamma-tubulin complex localization1.16E-03
45GO:1900865: chloroplast RNA modification1.23E-03
46GO:0009451: RNA modification1.37E-03
47GO:0048829: root cap development1.44E-03
48GO:1900140: regulation of seedling development1.91E-03
49GO:0001578: microtubule bundle formation1.91E-03
50GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.91E-03
51GO:0080117: secondary growth1.91E-03
52GO:0090391: granum assembly1.91E-03
53GO:0006518: peptide metabolic process1.91E-03
54GO:0009733: response to auxin1.95E-03
55GO:0010029: regulation of seed germination2.02E-03
56GO:0009793: embryo development ending in seed dormancy2.10E-03
57GO:0010588: cotyledon vascular tissue pattern formation2.17E-03
58GO:1901332: negative regulation of lateral root development2.76E-03
59GO:1902290: positive regulation of defense response to oomycetes2.76E-03
60GO:0010371: regulation of gibberellin biosynthetic process2.76E-03
61GO:1902476: chloride transmembrane transport2.76E-03
62GO:0010239: chloroplast mRNA processing2.76E-03
63GO:0007276: gamete generation2.76E-03
64GO:0043481: anthocyanin accumulation in tissues in response to UV light2.76E-03
65GO:0009800: cinnamic acid biosynthetic process2.76E-03
66GO:0010187: negative regulation of seed germination3.40E-03
67GO:0009863: salicylic acid mediated signaling pathway3.40E-03
68GO:0009867: jasmonic acid mediated signaling pathway3.58E-03
69GO:0006346: methylation-dependent chromatin silencing3.72E-03
70GO:0006808: regulation of nitrogen utilization3.72E-03
71GO:0006479: protein methylation3.72E-03
72GO:0048629: trichome patterning3.72E-03
73GO:0060548: negative regulation of cell death3.72E-03
74GO:0051322: anaphase3.72E-03
75GO:0000914: phragmoplast assembly3.72E-03
76GO:0006221: pyrimidine nucleotide biosynthetic process3.72E-03
77GO:0003333: amino acid transmembrane transport4.13E-03
78GO:0016998: cell wall macromolecule catabolic process4.13E-03
79GO:0030001: metal ion transport4.23E-03
80GO:0048497: maintenance of floral organ identity4.78E-03
81GO:0032876: negative regulation of DNA endoreduplication4.78E-03
82GO:0030308: negative regulation of cell growth4.78E-03
83GO:0010375: stomatal complex patterning4.78E-03
84GO:0080110: sporopollenin biosynthetic process4.78E-03
85GO:0016131: brassinosteroid metabolic process4.78E-03
86GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.93E-03
87GO:0009926: auxin polar transport4.95E-03
88GO:0040008: regulation of growth5.22E-03
89GO:0010584: pollen exine formation5.37E-03
90GO:0003006: developmental process involved in reproduction5.92E-03
91GO:0006559: L-phenylalanine catabolic process5.92E-03
92GO:0009643: photosynthetic acclimation5.92E-03
93GO:0010304: PSII associated light-harvesting complex II catabolic process5.92E-03
94GO:0016554: cytidine to uridine editing5.92E-03
95GO:1902456: regulation of stomatal opening5.92E-03
96GO:0042176: regulation of protein catabolic process5.92E-03
97GO:0048831: regulation of shoot system development5.92E-03
98GO:0010315: auxin efflux5.92E-03
99GO:0010087: phloem or xylem histogenesis6.30E-03
100GO:0010118: stomatal movement6.30E-03
101GO:0006351: transcription, DNA-templated6.52E-03
102GO:0010305: leaf vascular tissue pattern formation6.79E-03
103GO:0010268: brassinosteroid homeostasis6.79E-03
104GO:0048509: regulation of meristem development7.16E-03
105GO:2000037: regulation of stomatal complex patterning7.16E-03
106GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity7.16E-03
107GO:0010310: regulation of hydrogen peroxide metabolic process7.16E-03
108GO:0009955: adaxial/abaxial pattern specification7.16E-03
109GO:0071470: cellular response to osmotic stress7.16E-03
110GO:0000911: cytokinesis by cell plate formation7.16E-03
111GO:0006364: rRNA processing7.26E-03
112GO:0048825: cotyledon development7.85E-03
113GO:0080156: mitochondrial mRNA modification8.41E-03
114GO:0010103: stomatal complex morphogenesis8.47E-03
115GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.47E-03
116GO:0006401: RNA catabolic process8.47E-03
117GO:0006821: chloride transport8.47E-03
118GO:0048367: shoot system development9.37E-03
119GO:0010090: trichome morphogenesis9.59E-03
120GO:0042255: ribosome assembly9.87E-03
121GO:0006353: DNA-templated transcription, termination9.87E-03
122GO:0048766: root hair initiation9.87E-03
123GO:0010492: maintenance of shoot apical meristem identity9.87E-03
124GO:0000105: histidine biosynthetic process9.87E-03
125GO:0052543: callose deposition in cell wall9.87E-03
126GO:0009787: regulation of abscisic acid-activated signaling pathway9.87E-03
127GO:0009642: response to light intensity9.87E-03
128GO:0010252: auxin homeostasis1.02E-02
129GO:0009828: plant-type cell wall loosening1.02E-02
130GO:0009740: gibberellic acid mediated signaling pathway1.06E-02
131GO:0032544: plastid translation1.13E-02
132GO:0007389: pattern specification process1.13E-02
133GO:0044030: regulation of DNA methylation1.13E-02
134GO:0009827: plant-type cell wall modification1.13E-02
135GO:0019430: removal of superoxide radicals1.13E-02
136GO:0007186: G-protein coupled receptor signaling pathway1.13E-02
137GO:0010233: phloem transport1.13E-02
138GO:0000910: cytokinesis1.15E-02
139GO:0006355: regulation of transcription, DNA-templated1.22E-02
140GO:0048507: meristem development1.29E-02
141GO:0048589: developmental growth1.29E-02
142GO:0098656: anion transmembrane transport1.29E-02
143GO:0009245: lipid A biosynthetic process1.29E-02
144GO:1900426: positive regulation of defense response to bacterium1.45E-02
145GO:0042761: very long-chain fatty acid biosynthetic process1.45E-02
146GO:0006349: regulation of gene expression by genetic imprinting1.45E-02
147GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.59E-02
148GO:0006535: cysteine biosynthetic process from serine1.62E-02
149GO:0006949: syncytium formation1.62E-02
150GO:0031627: telomeric loop formation1.62E-02
151GO:0010048: vernalization response1.62E-02
152GO:0048767: root hair elongation1.68E-02
153GO:0010218: response to far red light1.77E-02
154GO:0015770: sucrose transport1.80E-02
155GO:0009750: response to fructose1.80E-02
156GO:0048229: gametophyte development1.80E-02
157GO:0048765: root hair cell differentiation1.80E-02
158GO:0046856: phosphatidylinositol dephosphorylation1.80E-02
159GO:0009089: lysine biosynthetic process via diaminopimelate1.80E-02
160GO:0009682: induced systemic resistance1.80E-02
161GO:0006865: amino acid transport1.94E-02
162GO:0010105: negative regulation of ethylene-activated signaling pathway1.98E-02
163GO:0010582: floral meristem determinacy1.98E-02
164GO:0008361: regulation of cell size1.98E-02
165GO:0012501: programmed cell death1.98E-02
166GO:0010152: pollen maturation1.98E-02
167GO:0010102: lateral root morphogenesis2.17E-02
168GO:0006270: DNA replication initiation2.36E-02
169GO:0009887: animal organ morphogenesis2.36E-02
170GO:0010540: basipetal auxin transport2.36E-02
171GO:0048467: gynoecium development2.36E-02
172GO:0010020: chloroplast fission2.36E-02
173GO:0032259: methylation2.54E-02
174GO:0009901: anther dehiscence2.56E-02
175GO:0009739: response to gibberellin2.63E-02
176GO:0006281: DNA repair2.70E-02
177GO:0006071: glycerol metabolic process2.77E-02
178GO:0019344: cysteine biosynthetic process2.98E-02
179GO:0080147: root hair cell development2.98E-02
180GO:0031347: regulation of defense response3.17E-02
181GO:0010073: meristem maintenance3.20E-02
182GO:0006825: copper ion transport3.20E-02
183GO:0006874: cellular calcium ion homeostasis3.20E-02
184GO:0009664: plant-type cell wall organization3.29E-02
185GO:0042538: hyperosmotic salinity response3.29E-02
186GO:0010431: seed maturation3.42E-02
187GO:0006306: DNA methylation3.42E-02
188GO:2000022: regulation of jasmonic acid mediated signaling pathway3.65E-02
189GO:0009826: unidimensional cell growth3.76E-02
190GO:0071215: cellular response to abscisic acid stimulus3.88E-02
191GO:0010082: regulation of root meristem growth3.88E-02
192GO:0042127: regulation of cell proliferation4.12E-02
193GO:0048443: stamen development4.12E-02
194GO:0006284: base-excision repair4.12E-02
195GO:0070417: cellular response to cold4.36E-02
196GO:0042335: cuticle development4.61E-02
197GO:0080022: primary root development4.61E-02
198GO:0008033: tRNA processing4.61E-02
199GO:0010501: RNA secondary structure unwinding4.61E-02
200GO:0042631: cellular response to water deprivation4.61E-02
201GO:0000226: microtubule cytoskeleton organization4.61E-02
202GO:0009723: response to ethylene4.71E-02
203GO:0009741: response to brassinosteroid4.86E-02
204GO:0009960: endosperm development4.86E-02
205GO:0009958: positive gravitropism4.86E-02
206GO:0071472: cellular response to salt stress4.86E-02
RankGO TermAdjusted P value
1GO:0008859: exoribonuclease II activity0.00E+00
2GO:0042834: peptidoglycan binding0.00E+00
3GO:0071633: dihydroceramidase activity0.00E+00
4GO:0003723: RNA binding6.93E-06
5GO:0008395: steroid hydroxylase activity5.40E-04
6GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor5.40E-04
7GO:0004016: adenylate cyclase activity5.40E-04
8GO:0004400: histidinol-phosphate transaminase activity5.40E-04
9GO:1905201: gibberellin transmembrane transporter activity5.40E-04
10GO:0008836: diaminopimelate decarboxylase activity5.40E-04
11GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.40E-04
12GO:0016274: protein-arginine N-methyltransferase activity5.40E-04
13GO:0003697: single-stranded DNA binding6.09E-04
14GO:0004519: endonuclease activity8.17E-04
15GO:0000989: transcription factor activity, transcription factor binding1.04E-03
16GO:0019901: protein kinase binding1.08E-03
17GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.16E-03
18GO:0009884: cytokinin receptor activity1.16E-03
19GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.16E-03
20GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.16E-03
21GO:0009672: auxin:proton symporter activity1.23E-03
22GO:0070181: small ribosomal subunit rRNA binding1.91E-03
23GO:0016805: dipeptidase activity1.91E-03
24GO:0005034: osmosensor activity1.91E-03
25GO:0017150: tRNA dihydrouridine synthase activity1.91E-03
26GO:0045548: phenylalanine ammonia-lyase activity1.91E-03
27GO:0010329: auxin efflux transmembrane transporter activity2.17E-03
28GO:0003725: double-stranded RNA binding2.17E-03
29GO:0008168: methyltransferase activity2.66E-03
30GO:0003677: DNA binding2.75E-03
31GO:0001872: (1->3)-beta-D-glucan binding2.76E-03
32GO:0009041: uridylate kinase activity2.76E-03
33GO:0003700: transcription factor activity, sequence-specific DNA binding3.41E-03
34GO:0005253: anion channel activity3.72E-03
35GO:0004930: G-protein coupled receptor activity3.72E-03
36GO:0010011: auxin binding3.72E-03
37GO:0010328: auxin influx transmembrane transporter activity3.72E-03
38GO:0010385: double-stranded methylated DNA binding3.72E-03
39GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.18E-03
40GO:0043565: sequence-specific DNA binding4.44E-03
41GO:0005496: steroid binding4.78E-03
42GO:0008725: DNA-3-methyladenine glycosylase activity4.78E-03
43GO:0030570: pectate lyase activity4.93E-03
44GO:0003727: single-stranded RNA binding5.37E-03
45GO:0004784: superoxide dismutase activity5.92E-03
46GO:0009378: four-way junction helicase activity5.92E-03
47GO:0005247: voltage-gated chloride channel activity5.92E-03
48GO:0003688: DNA replication origin binding5.92E-03
49GO:0080030: methyl indole-3-acetate esterase activity5.92E-03
50GO:0043140: ATP-dependent 3'-5' DNA helicase activity5.92E-03
51GO:0031177: phosphopantetheine binding5.92E-03
52GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity5.92E-03
53GO:0004871: signal transducer activity6.20E-03
54GO:0001085: RNA polymerase II transcription factor binding6.79E-03
55GO:0019900: kinase binding7.16E-03
56GO:0004124: cysteine synthase activity7.16E-03
57GO:0000035: acyl binding7.16E-03
58GO:0004714: transmembrane receptor protein tyrosine kinase activity9.87E-03
59GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process9.87E-03
60GO:0008237: metallopeptidase activity1.09E-02
61GO:0008173: RNA methyltransferase activity1.13E-02
62GO:0008889: glycerophosphodiester phosphodiesterase activity1.29E-02
63GO:0019843: rRNA binding1.52E-02
64GO:0004673: protein histidine kinase activity1.62E-02
65GO:0004222: metalloendopeptidase activity1.77E-02
66GO:0008559: xenobiotic-transporting ATPase activity1.80E-02
67GO:0004674: protein serine/threonine kinase activity1.80E-02
68GO:0003691: double-stranded telomeric DNA binding1.80E-02
69GO:0008515: sucrose transmembrane transporter activity1.80E-02
70GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.85E-02
71GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.98E-02
72GO:0004022: alcohol dehydrogenase (NAD) activity2.17E-02
73GO:0005315: inorganic phosphate transmembrane transporter activity2.17E-02
74GO:0031072: heat shock protein binding2.17E-02
75GO:0000155: phosphorelay sensor kinase activity2.17E-02
76GO:0009982: pseudouridine synthase activity2.17E-02
77GO:0000175: 3'-5'-exoribonuclease activity2.17E-02
78GO:0008017: microtubule binding2.42E-02
79GO:0004970: ionotropic glutamate receptor activity2.56E-02
80GO:0051119: sugar transmembrane transporter activity2.56E-02
81GO:0005217: intracellular ligand-gated ion channel activity2.56E-02
82GO:0004190: aspartic-type endopeptidase activity2.56E-02
83GO:0043621: protein self-association2.84E-02
84GO:0015293: symporter activity2.95E-02
85GO:0005515: protein binding3.19E-02
86GO:0043424: protein histidine kinase binding3.20E-02
87GO:0015079: potassium ion transmembrane transporter activity3.20E-02
88GO:0004176: ATP-dependent peptidase activity3.42E-02
89GO:0004540: ribonuclease activity3.42E-02
90GO:0003690: double-stranded DNA binding3.66E-02
91GO:0003777: microtubule motor activity3.91E-02
92GO:0015171: amino acid transmembrane transporter activity3.91E-02
93GO:0016788: hydrolase activity, acting on ester bonds4.03E-02
94GO:0008514: organic anion transmembrane transporter activity4.12E-02
95GO:0003682: chromatin binding4.22E-02
96GO:0018024: histone-lysine N-methyltransferase activity4.36E-02
97GO:0008289: lipid binding4.37E-02
98GO:0004650: polygalacturonase activity4.58E-02
99GO:0004402: histone acetyltransferase activity4.61E-02
100GO:0003779: actin binding4.86E-02
101GO:0003713: transcription coactivator activity4.86E-02
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Gene type



Gene DE type