gene detail

Gene description

TAIR ID: AT3G62980

Short description: F-box/RNI-like superfamily protein

Pathogen responsiveness: -0.63

General responsiveness: -2.09

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G135978

Wheat: No orthologous gene

GO biological process

ethylene-activated signaling pathway, auxin-activated signaling pathway, pollen maturation, cellular response to phosphate starvation, stamen development, protein ubiquitination, cell cycle, ubiquitin-dependent protein catabolic process, response to auxin, lateral root formation, defense response

GO cellular component

nucleus, ubiquitin ligase complex

GO molecular function

auxin binding, protein binding, inositol hexakisphosphate binding, ubiquitin-protein transferase activity, auxin receptor activity

Protein domain

Pfam	PF12937, F-box-like
SMART	SM00256, FBOX
SMART	SM00367, LRR_CC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04075: Plant hormone signal transduction

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 25 (Top10%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

11 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	2.03	3.12E-07
GSE17464	Penta, control	Penta, PstDC3000 12 h	1.73	6.72E-06
GSE17464	Penta, control	Penta, Flg22 2 h	-1.57	4.09E-05
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.93	1.02E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.60	5.95E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.08	1.48E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.50	1.04E-11
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.63	1.94E-08
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.01	1.28E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.80	1.31E-02
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	-1.94	1.01E-02