gene detail

Gene description

TAIR ID: AT3G59850

Short description: Pectin lyase-like superfamily protein

Pathogen responsiveness: -2.23

General responsiveness: -0.55

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

carbohydrate metabolic process

GO cellular component

extracellular region

GO molecular function

polygalacturonase activity

Protein domain

Pfam	PF00295, Glycosyl hydrolases family 28
SMART	SM00710, PbH1

Metabolic pathway

PWY-1081: homogalacturonan degradation

KEGG pathway

PATH:ath00040: Pentose and glucuronate interconversions

Transcriptional regulation

Regulator:
AT3G09290

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

Coexpression network

GSE56094_WT_HRPA- view
GSE56094_WT_PSTDC3000 view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.98	8.97E-03
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-2.75	3.66E-04
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-2.00	4.64E-03
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.53	3.66E-05