gene detail

Gene description

TAIR ID: AT3G59420

Short description: crinkly4

Pathogen responsiveness: -0.66

General responsiveness: -2.07

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

lateral root formation, embryo development ending in seed dormancy, root development, root cap development, regulation of asymmetric cell division

GO cellular component

integral component of membrane, endocytic vesicle, plasma membrane, multivesicular body membrane, cell surface

GO molecular function

protein serine/threonine kinase activity, transmembrane receptor protein kinase activity, protein binding, kinase activity, ATP binding, protein homodimerization activity

Protein domain

Pfam	PF13540, Regulator of chromosome condensation (RCC1) repeat
Pfam	PF00069, Protein kinase domain
SMART	SM00208, TNFR
SMART	SM00220, S_TKc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.59	2.16E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.55	4.10E-03
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.71	6.29E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.36	1.60E-13
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.59	1.75E-14
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.50	2.07E-13
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.68	4.89E-16