GO Enrichment Analysis of Co-expressed Genes with
AT3G59420
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 2 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 3 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 4 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 5 | GO:0007172: signal complex assembly | 0.00E+00 |
| 6 | GO:0010480: microsporocyte differentiation | 0.00E+00 |
| 7 | GO:0015843: methylammonium transport | 0.00E+00 |
| 8 | GO:0031222: arabinan catabolic process | 0.00E+00 |
| 9 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.57E-10 |
| 10 | GO:0006468: protein phosphorylation | 2.97E-07 |
| 11 | GO:0009934: regulation of meristem structural organization | 5.88E-05 |
| 12 | GO:0040008: regulation of growth | 2.11E-04 |
| 13 | GO:0048437: floral organ development | 2.21E-04 |
| 14 | GO:0009638: phototropism | 4.91E-04 |
| 15 | GO:0031425: chloroplast RNA processing | 4.91E-04 |
| 16 | GO:0010254: nectary development | 6.25E-04 |
| 17 | GO:0010569: regulation of double-strand break repair via homologous recombination | 6.25E-04 |
| 18 | GO:0010434: bract formation | 6.25E-04 |
| 19 | GO:0048439: flower morphogenesis | 6.25E-04 |
| 20 | GO:2000123: positive regulation of stomatal complex development | 6.25E-04 |
| 21 | GO:0048229: gametophyte development | 6.61E-04 |
| 22 | GO:0010582: floral meristem determinacy | 7.56E-04 |
| 23 | GO:0010075: regulation of meristem growth | 8.57E-04 |
| 24 | GO:0009767: photosynthetic electron transport chain | 8.57E-04 |
| 25 | GO:0071705: nitrogen compound transport | 1.01E-03 |
| 26 | GO:0051604: protein maturation | 1.01E-03 |
| 27 | GO:0016050: vesicle organization | 1.01E-03 |
| 28 | GO:0009954: proximal/distal pattern formation | 1.01E-03 |
| 29 | GO:0090351: seedling development | 1.07E-03 |
| 30 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.32E-03 |
| 31 | GO:0051639: actin filament network formation | 1.45E-03 |
| 32 | GO:0044211: CTP salvage | 1.45E-03 |
| 33 | GO:0019048: modulation by virus of host morphology or physiology | 1.45E-03 |
| 34 | GO:0031048: chromatin silencing by small RNA | 1.45E-03 |
| 35 | GO:0015696: ammonium transport | 1.45E-03 |
| 36 | GO:0046739: transport of virus in multicellular host | 1.45E-03 |
| 37 | GO:2000904: regulation of starch metabolic process | 1.45E-03 |
| 38 | GO:0007231: osmosensory signaling pathway | 1.45E-03 |
| 39 | GO:0006306: DNA methylation | 1.60E-03 |
| 40 | GO:0051764: actin crosslink formation | 1.94E-03 |
| 41 | GO:0071249: cellular response to nitrate | 1.94E-03 |
| 42 | GO:0072488: ammonium transmembrane transport | 1.94E-03 |
| 43 | GO:0022622: root system development | 1.94E-03 |
| 44 | GO:0051567: histone H3-K9 methylation | 1.94E-03 |
| 45 | GO:0044206: UMP salvage | 1.94E-03 |
| 46 | GO:0033500: carbohydrate homeostasis | 1.94E-03 |
| 47 | GO:2000038: regulation of stomatal complex development | 1.94E-03 |
| 48 | GO:0044205: 'de novo' UMP biosynthetic process | 1.94E-03 |
| 49 | GO:0009165: nucleotide biosynthetic process | 1.94E-03 |
| 50 | GO:0048653: anther development | 2.42E-03 |
| 51 | GO:0010158: abaxial cell fate specification | 2.48E-03 |
| 52 | GO:0010375: stomatal complex patterning | 2.48E-03 |
| 53 | GO:0006544: glycine metabolic process | 2.48E-03 |
| 54 | GO:1902183: regulation of shoot apical meristem development | 2.48E-03 |
| 55 | GO:0006342: chromatin silencing | 2.61E-03 |
| 56 | GO:0009734: auxin-activated signaling pathway | 2.76E-03 |
| 57 | GO:0006206: pyrimidine nucleobase metabolic process | 3.06E-03 |
| 58 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 3.06E-03 |
| 59 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.06E-03 |
| 60 | GO:0006139: nucleobase-containing compound metabolic process | 3.06E-03 |
| 61 | GO:0016458: gene silencing | 3.06E-03 |
| 62 | GO:0006563: L-serine metabolic process | 3.06E-03 |
| 63 | GO:0010405: arabinogalactan protein metabolic process | 3.06E-03 |
| 64 | GO:0009959: negative gravitropism | 3.06E-03 |
| 65 | GO:0016310: phosphorylation | 3.40E-03 |
| 66 | GO:0032502: developmental process | 3.43E-03 |
| 67 | GO:0080167: response to karrikin | 3.49E-03 |
| 68 | GO:0009742: brassinosteroid mediated signaling pathway | 3.60E-03 |
| 69 | GO:0010067: procambium histogenesis | 3.68E-03 |
| 70 | GO:0030488: tRNA methylation | 3.68E-03 |
| 71 | GO:0010252: auxin homeostasis | 3.89E-03 |
| 72 | GO:0010050: vegetative phase change | 4.34E-03 |
| 73 | GO:0032880: regulation of protein localization | 4.34E-03 |
| 74 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 4.34E-03 |
| 75 | GO:0010161: red light signaling pathway | 4.34E-03 |
| 76 | GO:0009610: response to symbiotic fungus | 4.34E-03 |
| 77 | GO:0051607: defense response to virus | 4.39E-03 |
| 78 | GO:0009058: biosynthetic process | 4.76E-03 |
| 79 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 5.03E-03 |
| 80 | GO:0030162: regulation of proteolysis | 5.03E-03 |
| 81 | GO:0046620: regulation of organ growth | 5.03E-03 |
| 82 | GO:0009850: auxin metabolic process | 5.03E-03 |
| 83 | GO:0009733: response to auxin | 5.58E-03 |
| 84 | GO:0009827: plant-type cell wall modification | 5.77E-03 |
| 85 | GO:0010497: plasmodesmata-mediated intercellular transport | 5.77E-03 |
| 86 | GO:0010052: guard cell differentiation | 5.77E-03 |
| 87 | GO:0010100: negative regulation of photomorphogenesis | 5.77E-03 |
| 88 | GO:0006526: arginine biosynthetic process | 5.77E-03 |
| 89 | GO:0007389: pattern specification process | 5.77E-03 |
| 90 | GO:0010099: regulation of photomorphogenesis | 5.77E-03 |
| 91 | GO:0000160: phosphorelay signal transduction system | 6.37E-03 |
| 92 | GO:0009051: pentose-phosphate shunt, oxidative branch | 6.54E-03 |
| 93 | GO:2000024: regulation of leaf development | 6.54E-03 |
| 94 | GO:0006783: heme biosynthetic process | 6.54E-03 |
| 95 | GO:0000373: Group II intron splicing | 6.54E-03 |
| 96 | GO:0000902: cell morphogenesis | 6.54E-03 |
| 97 | GO:0035999: tetrahydrofolate interconversion | 7.35E-03 |
| 98 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 7.35E-03 |
| 99 | GO:0007166: cell surface receptor signaling pathway | 7.96E-03 |
| 100 | GO:0009299: mRNA transcription | 8.19E-03 |
| 101 | GO:0006535: cysteine biosynthetic process from serine | 8.19E-03 |
| 102 | GO:0030422: production of siRNA involved in RNA interference | 8.19E-03 |
| 103 | GO:0009641: shade avoidance | 8.19E-03 |
| 104 | GO:0006816: calcium ion transport | 9.06E-03 |
| 105 | GO:0009773: photosynthetic electron transport in photosystem I | 9.06E-03 |
| 106 | GO:0009089: lysine biosynthetic process via diaminopimelate | 9.06E-03 |
| 107 | GO:0010015: root morphogenesis | 9.06E-03 |
| 108 | GO:0006897: endocytosis | 9.14E-03 |
| 109 | GO:0016024: CDP-diacylglycerol biosynthetic process | 9.96E-03 |
| 110 | GO:0015706: nitrate transport | 9.96E-03 |
| 111 | GO:2000012: regulation of auxin polar transport | 1.09E-02 |
| 112 | GO:0009785: blue light signaling pathway | 1.09E-02 |
| 113 | GO:0010628: positive regulation of gene expression | 1.09E-02 |
| 114 | GO:0006006: glucose metabolic process | 1.09E-02 |
| 115 | GO:0009725: response to hormone | 1.09E-02 |
| 116 | GO:0010207: photosystem II assembly | 1.19E-02 |
| 117 | GO:0010223: secondary shoot formation | 1.19E-02 |
| 118 | GO:0010167: response to nitrate | 1.29E-02 |
| 119 | GO:0070588: calcium ion transmembrane transport | 1.29E-02 |
| 120 | GO:0009735: response to cytokinin | 1.32E-02 |
| 121 | GO:0009736: cytokinin-activated signaling pathway | 1.34E-02 |
| 122 | GO:0006071: glycerol metabolic process | 1.39E-02 |
| 123 | GO:0010187: negative regulation of seed germination | 1.50E-02 |
| 124 | GO:0051017: actin filament bundle assembly | 1.50E-02 |
| 125 | GO:0005992: trehalose biosynthetic process | 1.50E-02 |
| 126 | GO:0019344: cysteine biosynthetic process | 1.50E-02 |
| 127 | GO:0006825: copper ion transport | 1.60E-02 |
| 128 | GO:0048316: seed development | 1.64E-02 |
| 129 | GO:0030154: cell differentiation | 1.64E-02 |
| 130 | GO:0006334: nucleosome assembly | 1.72E-02 |
| 131 | GO:0009740: gibberellic acid mediated signaling pathway | 1.80E-02 |
| 132 | GO:0006730: one-carbon metabolic process | 1.83E-02 |
| 133 | GO:0031348: negative regulation of defense response | 1.83E-02 |
| 134 | GO:0009686: gibberellin biosynthetic process | 1.95E-02 |
| 135 | GO:0010082: regulation of root meristem growth | 1.95E-02 |
| 136 | GO:0001944: vasculature development | 1.95E-02 |
| 137 | GO:0010227: floral organ abscission | 1.95E-02 |
| 138 | GO:0006284: base-excision repair | 2.07E-02 |
| 139 | GO:0010089: xylem development | 2.07E-02 |
| 140 | GO:0008284: positive regulation of cell proliferation | 2.19E-02 |
| 141 | GO:0009958: positive gravitropism | 2.44E-02 |
| 142 | GO:0008654: phospholipid biosynthetic process | 2.70E-02 |
| 143 | GO:0071554: cell wall organization or biogenesis | 2.83E-02 |
| 144 | GO:0000302: response to reactive oxygen species | 2.83E-02 |
| 145 | GO:0031047: gene silencing by RNA | 2.97E-02 |
| 146 | GO:0071281: cellular response to iron ion | 3.11E-02 |
| 147 | GO:0007623: circadian rhythm | 3.31E-02 |
| 148 | GO:0009451: RNA modification | 3.38E-02 |
| 149 | GO:0007267: cell-cell signaling | 3.39E-02 |
| 150 | GO:0010027: thylakoid membrane organization | 3.68E-02 |
| 151 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.70E-02 |
| 152 | GO:0016567: protein ubiquitination | 3.73E-02 |
| 153 | GO:0010029: regulation of seed germination | 3.83E-02 |
| 154 | GO:0009816: defense response to bacterium, incompatible interaction | 3.83E-02 |
| 155 | GO:0015995: chlorophyll biosynthetic process | 4.13E-02 |
| 156 | GO:0010411: xyloglucan metabolic process | 4.13E-02 |
| 157 | GO:0071555: cell wall organization | 4.25E-02 |
| 158 | GO:0007165: signal transduction | 4.82E-02 |
| 159 | GO:0048527: lateral root development | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 2 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 3 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 4 | GO:0004674: protein serine/threonine kinase activity | 5.99E-08 |
| 5 | GO:0016301: kinase activity | 1.16E-06 |
| 6 | GO:0004672: protein kinase activity | 1.53E-05 |
| 7 | GO:0033612: receptor serine/threonine kinase binding | 1.31E-04 |
| 8 | GO:0004008: copper-exporting ATPase activity | 2.84E-04 |
| 9 | GO:0010313: phytochrome binding | 2.84E-04 |
| 10 | GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 2.84E-04 |
| 11 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 2.84E-04 |
| 12 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.84E-04 |
| 13 | GO:0010285: L,L-diaminopimelate aminotransferase activity | 2.84E-04 |
| 14 | GO:0015929: hexosaminidase activity | 6.25E-04 |
| 15 | GO:0004563: beta-N-acetylhexosaminidase activity | 6.25E-04 |
| 16 | GO:0050017: L-3-cyanoalanine synthase activity | 6.25E-04 |
| 17 | GO:0043425: bHLH transcription factor binding | 6.25E-04 |
| 18 | GO:0017150: tRNA dihydrouridine synthase activity | 1.01E-03 |
| 19 | GO:0032549: ribonucleoside binding | 1.01E-03 |
| 20 | GO:0070180: large ribosomal subunit rRNA binding | 1.01E-03 |
| 21 | GO:0035197: siRNA binding | 1.45E-03 |
| 22 | GO:0017172: cysteine dioxygenase activity | 1.45E-03 |
| 23 | GO:0001872: (1->3)-beta-D-glucan binding | 1.45E-03 |
| 24 | GO:0043621: protein self-association | 1.61E-03 |
| 25 | GO:0005524: ATP binding | 1.67E-03 |
| 26 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.94E-03 |
| 27 | GO:0004845: uracil phosphoribosyltransferase activity | 1.94E-03 |
| 28 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.94E-03 |
| 29 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.48E-03 |
| 30 | GO:0004372: glycine hydroxymethyltransferase activity | 2.48E-03 |
| 31 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.48E-03 |
| 32 | GO:0008519: ammonium transmembrane transporter activity | 3.06E-03 |
| 33 | GO:0004605: phosphatidate cytidylyltransferase activity | 3.06E-03 |
| 34 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 3.06E-03 |
| 35 | GO:0000156: phosphorelay response regulator activity | 3.66E-03 |
| 36 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.68E-03 |
| 37 | GO:0004849: uridine kinase activity | 3.68E-03 |
| 38 | GO:0004656: procollagen-proline 4-dioxygenase activity | 3.68E-03 |
| 39 | GO:0004124: cysteine synthase activity | 3.68E-03 |
| 40 | GO:0008483: transaminase activity | 4.14E-03 |
| 41 | GO:0004871: signal transducer activity | 4.93E-03 |
| 42 | GO:0004252: serine-type endopeptidase activity | 5.08E-03 |
| 43 | GO:0030170: pyridoxal phosphate binding | 5.08E-03 |
| 44 | GO:0005375: copper ion transmembrane transporter activity | 5.77E-03 |
| 45 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 6.13E-03 |
| 46 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 6.54E-03 |
| 47 | GO:0030246: carbohydrate binding | 6.97E-03 |
| 48 | GO:0009672: auxin:proton symporter activity | 7.35E-03 |
| 49 | GO:0004713: protein tyrosine kinase activity | 8.19E-03 |
| 50 | GO:0004805: trehalose-phosphatase activity | 8.19E-03 |
| 51 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 9.06E-03 |
| 52 | GO:0001054: RNA polymerase I activity | 9.06E-03 |
| 53 | GO:0004521: endoribonuclease activity | 9.96E-03 |
| 54 | GO:0010329: auxin efflux transmembrane transporter activity | 1.09E-02 |
| 55 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 1.09E-02 |
| 56 | GO:0004089: carbonate dehydratase activity | 1.09E-02 |
| 57 | GO:0005262: calcium channel activity | 1.09E-02 |
| 58 | GO:0008083: growth factor activity | 1.19E-02 |
| 59 | GO:0031418: L-ascorbic acid binding | 1.50E-02 |
| 60 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.60E-02 |
| 61 | GO:0035251: UDP-glucosyltransferase activity | 1.72E-02 |
| 62 | GO:0004176: ATP-dependent peptidase activity | 1.72E-02 |
| 63 | GO:0004650: polygalacturonase activity | 1.75E-02 |
| 64 | GO:0003727: single-stranded RNA binding | 2.07E-02 |
| 65 | GO:0008514: organic anion transmembrane transporter activity | 2.07E-02 |
| 66 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.28E-02 |
| 67 | GO:0019901: protein kinase binding | 2.70E-02 |
| 68 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.83E-02 |
| 69 | GO:0051015: actin filament binding | 3.11E-02 |
| 70 | GO:0016759: cellulose synthase activity | 3.25E-02 |
| 71 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 3.39E-02 |
| 72 | GO:0016413: O-acetyltransferase activity | 3.54E-02 |
| 73 | GO:0030247: polysaccharide binding | 4.13E-02 |
| 74 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 4.13E-02 |
| 75 | GO:0008236: serine-type peptidase activity | 4.29E-02 |
| 76 | GO:0015238: drug transmembrane transporter activity | 4.60E-02 |
| 77 | GO:0008168: methyltransferase activity | 4.90E-02 |