gene detail

Gene description

TAIR ID: AT3G57150

Short description: homologue of NAP57

Pathogen responsiveness: -1.79

General responsiveness: 0.29

Orthologous

Rice:

Maize:

Wheat:

GO biological process

box H/ACA snoRNA 3'-end processing, snRNA pseudouridine synthesis, mRNA pseudouridine synthesis, rRNA pseudouridine synthesis

GO cellular component

plasmodesma, box H/ACA snoRNP complex, nucleolus, nucleus, cytosol

GO molecular function

RNA binding, pseudouridine synthase activity

Protein domain

Pfam	PF16198, tRNA pseudouridylate synthase B C-terminal domain
Pfam	PF01509, TruB family pseudouridylate synthase (N terminal domain)
Pfam	PF08068, DKCLD (NUC011) domain
Pfam	PF01472, PUA domain
SMART	SM01136, DKCLD
SMART	SM00359, PUA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03008: Ribosome biogenesis in eukaryotes

Transcriptional regulation

Regulator:
AT5G13790, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

Coexpression network

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, WT, water 4 h	Col, WT, Flg22 4 h	1.60	7.44E-03
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.30	4.00E-06
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.66	8.31E-03