GO Enrichment Analysis of Co-expressed Genes with
AT3G57150
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 6 | GO:0006364: rRNA processing | 1.29E-15 |
| 7 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.79E-07 |
| 8 | GO:0010162: seed dormancy process | 1.80E-06 |
| 9 | GO:0006412: translation | 3.70E-06 |
| 10 | GO:1990258: histone glutamine methylation | 9.50E-05 |
| 11 | GO:0006169: adenosine salvage | 9.50E-05 |
| 12 | GO:0000494: box C/D snoRNA 3'-end processing | 9.50E-05 |
| 13 | GO:0043985: histone H4-R3 methylation | 9.50E-05 |
| 14 | GO:0045041: protein import into mitochondrial intermembrane space | 2.24E-04 |
| 15 | GO:0034470: ncRNA processing | 2.24E-04 |
| 16 | GO:0009967: positive regulation of signal transduction | 2.24E-04 |
| 17 | GO:0042254: ribosome biogenesis | 2.43E-04 |
| 18 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.00E-04 |
| 19 | GO:0051302: regulation of cell division | 3.32E-04 |
| 20 | GO:0045039: protein import into mitochondrial inner membrane | 3.73E-04 |
| 21 | GO:0007005: mitochondrion organization | 4.00E-04 |
| 22 | GO:0009294: DNA mediated transformation | 4.36E-04 |
| 23 | GO:0016569: covalent chromatin modification | 4.53E-04 |
| 24 | GO:0051131: chaperone-mediated protein complex assembly | 5.37E-04 |
| 25 | GO:0006986: response to unfolded protein | 5.37E-04 |
| 26 | GO:0051085: chaperone mediated protein folding requiring cofactor | 5.37E-04 |
| 27 | GO:0007276: gamete generation | 5.37E-04 |
| 28 | GO:0010501: RNA secondary structure unwinding | 5.52E-04 |
| 29 | GO:0000460: maturation of 5.8S rRNA | 7.14E-04 |
| 30 | GO:0006479: protein methylation | 7.14E-04 |
| 31 | GO:1900864: mitochondrial RNA modification | 7.14E-04 |
| 32 | GO:0046345: abscisic acid catabolic process | 7.14E-04 |
| 33 | GO:0042274: ribosomal small subunit biogenesis | 7.14E-04 |
| 34 | GO:0042273: ribosomal large subunit biogenesis | 7.14E-04 |
| 35 | GO:0044209: AMP salvage | 9.02E-04 |
| 36 | GO:0000380: alternative mRNA splicing, via spliceosome | 9.02E-04 |
| 37 | GO:0031167: rRNA methylation | 9.02E-04 |
| 38 | GO:0009451: RNA modification | 9.93E-04 |
| 39 | GO:0000470: maturation of LSU-rRNA | 1.10E-03 |
| 40 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.10E-03 |
| 41 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.31E-03 |
| 42 | GO:0006458: 'de novo' protein folding | 1.31E-03 |
| 43 | GO:0042026: protein refolding | 1.31E-03 |
| 44 | GO:0006400: tRNA modification | 1.54E-03 |
| 45 | GO:0042255: ribosome assembly | 1.78E-03 |
| 46 | GO:0001558: regulation of cell growth | 2.03E-03 |
| 47 | GO:0001510: RNA methylation | 2.03E-03 |
| 48 | GO:0000387: spliceosomal snRNP assembly | 2.56E-03 |
| 49 | GO:1900865: chloroplast RNA modification | 2.56E-03 |
| 50 | GO:0030422: production of siRNA involved in RNA interference | 2.85E-03 |
| 51 | GO:0010582: floral meristem determinacy | 3.44E-03 |
| 52 | GO:0006626: protein targeting to mitochondrion | 3.76E-03 |
| 53 | GO:0009553: embryo sac development | 3.98E-03 |
| 54 | GO:0010030: positive regulation of seed germination | 4.41E-03 |
| 55 | GO:0061077: chaperone-mediated protein folding | 5.83E-03 |
| 56 | GO:0071215: cellular response to abscisic acid stimulus | 6.58E-03 |
| 57 | GO:0009561: megagametogenesis | 6.98E-03 |
| 58 | GO:0070417: cellular response to cold | 7.38E-03 |
| 59 | GO:0008033: tRNA processing | 7.79E-03 |
| 60 | GO:0000413: protein peptidyl-prolyl isomerization | 7.79E-03 |
| 61 | GO:0046686: response to cadmium ion | 8.24E-03 |
| 62 | GO:0016032: viral process | 9.96E-03 |
| 63 | GO:0006457: protein folding | 1.02E-02 |
| 64 | GO:0016049: cell growth | 1.43E-02 |
| 65 | GO:0048527: lateral root development | 1.65E-02 |
| 66 | GO:0045892: negative regulation of transcription, DNA-templated | 1.65E-02 |
| 67 | GO:0006099: tricarboxylic acid cycle | 1.81E-02 |
| 68 | GO:0032259: methylation | 1.92E-02 |
| 69 | GO:0009408: response to heat | 2.01E-02 |
| 70 | GO:0000154: rRNA modification | 2.29E-02 |
| 71 | GO:0048367: shoot system development | 3.00E-02 |
| 72 | GO:0009735: response to cytokinin | 3.26E-02 |
| 73 | GO:0006396: RNA processing | 3.42E-02 |
| 74 | GO:0000398: mRNA splicing, via spliceosome | 3.70E-02 |
| 75 | GO:0009845: seed germination | 4.15E-02 |
| 76 | GO:0009790: embryo development | 4.38E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0003723: RNA binding | 1.63E-17 |
| 3 | GO:0000166: nucleotide binding | 1.07E-08 |
| 4 | GO:0003735: structural constituent of ribosome | 3.36E-08 |
| 5 | GO:0004407: histone deacetylase activity | 1.09E-07 |
| 6 | GO:0030515: snoRNA binding | 2.98E-07 |
| 7 | GO:0043021: ribonucleoprotein complex binding | 4.79E-07 |
| 8 | GO:0008026: ATP-dependent helicase activity | 2.10E-06 |
| 9 | GO:0004001: adenosine kinase activity | 9.50E-05 |
| 10 | GO:0048037: cofactor binding | 9.50E-05 |
| 11 | GO:1990259: histone-glutamine methyltransferase activity | 9.50E-05 |
| 12 | GO:0042134: rRNA primary transcript binding | 9.50E-05 |
| 13 | GO:0005078: MAP-kinase scaffold activity | 2.24E-04 |
| 14 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 2.24E-04 |
| 15 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 2.24E-04 |
| 16 | GO:0070181: small ribosomal subunit rRNA binding | 3.73E-04 |
| 17 | GO:0008649: rRNA methyltransferase activity | 3.73E-04 |
| 18 | GO:0051082: unfolded protein binding | 4.89E-04 |
| 19 | GO:0005507: copper ion binding | 5.10E-04 |
| 20 | GO:0019843: rRNA binding | 6.48E-04 |
| 21 | GO:0004519: endonuclease activity | 6.94E-04 |
| 22 | GO:0004004: ATP-dependent RNA helicase activity | 1.21E-03 |
| 23 | GO:0008235: metalloexopeptidase activity | 1.54E-03 |
| 24 | GO:0008168: methyltransferase activity | 1.58E-03 |
| 25 | GO:0003746: translation elongation factor activity | 1.68E-03 |
| 26 | GO:0008173: RNA methyltransferase activity | 2.03E-03 |
| 27 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.89E-03 |
| 28 | GO:0001054: RNA polymerase I activity | 3.14E-03 |
| 29 | GO:0044183: protein binding involved in protein folding | 3.14E-03 |
| 30 | GO:0000049: tRNA binding | 3.44E-03 |
| 31 | GO:0001056: RNA polymerase III activity | 3.44E-03 |
| 32 | GO:0016787: hydrolase activity | 3.58E-03 |
| 33 | GO:0051087: chaperone binding | 5.46E-03 |
| 34 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.49E-02 |
| 35 | GO:0050897: cobalt ion binding | 1.65E-02 |
| 36 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.81E-02 |
| 37 | GO:0003924: GTPase activity | 2.01E-02 |
| 38 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.35E-02 |
| 39 | GO:0003676: nucleic acid binding | 3.51E-02 |
| 40 | GO:0005524: ATP binding | 3.62E-02 |
| 41 | GO:0008565: protein transporter activity | 4.46E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 4 | GO:0005730: nucleolus | 6.16E-31 |
| 5 | GO:0032040: small-subunit processome | 7.53E-13 |
| 6 | GO:0030687: preribosome, large subunit precursor | 2.98E-07 |
| 7 | GO:0070545: PeBoW complex | 4.79E-07 |
| 8 | GO:0005840: ribosome | 3.36E-06 |
| 9 | GO:0031428: box C/D snoRNP complex | 2.08E-05 |
| 10 | GO:0005634: nucleus | 2.82E-05 |
| 11 | GO:0022625: cytosolic large ribosomal subunit | 3.94E-05 |
| 12 | GO:0005759: mitochondrial matrix | 9.40E-05 |
| 13 | GO:0005662: DNA replication factor A complex | 9.50E-05 |
| 14 | GO:0015030: Cajal body | 1.00E-04 |
| 15 | GO:0022627: cytosolic small ribosomal subunit | 1.81E-04 |
| 16 | GO:0022626: cytosolic ribosome | 2.44E-04 |
| 17 | GO:0005834: heterotrimeric G-protein complex | 4.18E-04 |
| 18 | GO:0030529: intracellular ribonucleoprotein complex | 1.04E-03 |
| 19 | GO:0000974: Prp19 complex | 1.10E-03 |
| 20 | GO:0016363: nuclear matrix | 1.31E-03 |
| 21 | GO:0015934: large ribosomal subunit | 1.54E-03 |
| 22 | GO:0034399: nuclear periphery | 1.78E-03 |
| 23 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.86E-03 |
| 24 | GO:0005736: DNA-directed RNA polymerase I complex | 2.29E-03 |
| 25 | GO:0005666: DNA-directed RNA polymerase III complex | 2.56E-03 |
| 26 | GO:0071011: precatalytic spliceosome | 2.56E-03 |
| 27 | GO:0005618: cell wall | 3.11E-03 |
| 28 | GO:0071013: catalytic step 2 spliceosome | 3.14E-03 |
| 29 | GO:0005747: mitochondrial respiratory chain complex I | 3.52E-03 |
| 30 | GO:0019013: viral nucleocapsid | 3.76E-03 |
| 31 | GO:0005739: mitochondrion | 4.92E-03 |
| 32 | GO:0005654: nucleoplasm | 4.99E-03 |
| 33 | GO:0005758: mitochondrial intermembrane space | 5.10E-03 |
| 34 | GO:0005774: vacuolar membrane | 8.27E-03 |
| 35 | GO:0019898: extrinsic component of membrane | 9.06E-03 |
| 36 | GO:0016592: mediator complex | 9.96E-03 |
| 37 | GO:0005743: mitochondrial inner membrane | 1.87E-02 |
| 38 | GO:0005829: cytosol | 3.00E-02 |
| 39 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.56E-02 |
| 40 | GO:0009543: chloroplast thylakoid lumen | 3.92E-02 |