Gene: AT3G56710
     

Gene description


TAIR ID: AT3G56710

Short description: sigma factor binding protein 1

Pathogen responsiveness: 1.28

General responsiveness: 0.57

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


positive regulation of sequence-specific DNA binding transcription factor activity, cellular response to light stimulus, defense response to bacterium, incompatible interaction


GO cellular component


nucleus, chloroplast


GO molecular function


protein binding


Protein domain


PfamPF05678, VQ motif

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT1G24260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


53 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h1.711.62E-05
GSE12856Col, ataf1, controlCol, ataf1, Bg h2.612.54E-07
GSE17382Col, WT, Flg22 0 minCol, WT, Flg22 30 min3.204.02E-02
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d1.655.11E-03
GSE17464Penta, controlPenta, PstDC3000 12 h1.576.88E-03
GSE18329Col, WT, controlCol, WT, Hpa noco2 96 h2.268.24E-14
GSE18329Col, wrky72_1, controlCol, wrky72_1, Hpa noco2 96 h2.536.91E-15
GSE18329Col, wrky72_1, controlCol, wrky72_2, Hpa noco2 96 h2.771.82E-15
GSE2169Col, WT, waterCol, WT, chitin 30 min1.749.20E-10
GSE2169Col, rre1, waterCol, rre1, chitin 30 min1.881.57E-10
GSE2169Col, rre2, waterCol, rre2, chitin 30 min1.871.85E-10
GSE2538Col, WT, controlCol, WT, crab shell chitin 30 min2.594.62E-05
GSE2538Col, WT, controlCol, WT, purified chitin octamer 30 min2.341.07E-04
GSE26206Col, WT, controlCol, WT, R.solani_AG2_1 7 d1.933.31E-04
GSE26206Col, WT, controlCol, WT, R.solani_AG8 7 d2.216.80E-05
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h-2.389.76E-08
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h-2.388.68E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h-1.516.56E-05
GSE37255Ws-4, WT, controlWs-4, WT, Hyaloperonospora arabidopsidis strain Emwa1 3 d2.461.33E-02
GSE37255Ws-4, pskr1-5, controlWs-4, pskr1-5, Hyaloperonospora arabidopsidis strain Emwa1 3 d2.193.79E-02
GSE37269Ler0, WT, controlLer0, WT, TEV 21 d1.606.34E-03
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 AvrRpt21.731.48E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h3.255.93E-13
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h3.037.91E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h3.966.48E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h2.395.57E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h4.083.55E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h3.236.24E-13
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h3.705.49E-12
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h3.206.00E-11
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h4.006.62E-13
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h3.178.09E-11
GSE4746Col, WT, water 30 minCol, WT, chitooctaose 30 min2.404.75E-04
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h1.802.58E-03
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h2.602.71E-07
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_24 h1.542.57E-04
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h2.721.33E-07
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h1.826.27E-04
GSE5520Col, WT, control 24 hCol, WT, PsDC3118 Cor- 24 h2.998.47E-06
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h2.152.55E-04
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h1.587.43E-04
GSE5616Col, WT, water 24 hCol, WT, P. infestans 24 h3.671.50E-05
GSE5616Col, WT, water 6 hCol, WT, P. infestans 6 h1.842.45E-03
GSE5685Col, WT, control 24 hCol, WT, Ps ES4326 24 h1.543.75E-02
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h1.823.95E-03
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h2.816.77E-05
GSE73351Ws-4, WT, controlWs-4, WT, H.ara Emwa1 3 d2.461.22E-02
GSE73351Ws-4, map65_3, controlWs-4, map65_3, H.ara Emwa1 3 d2.068.61E-03
GSE73351Ws-4, ugt76b1, controlWs-4, ugt76b1, H.ara Emwa1 3 d2.292.85E-02
GSE8319Col, WT, controlCol, WT, chitooctaose 30 min2.462.50E-13
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h1.931.80E-02
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h2.973.28E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h2.805.23E-03






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.