gene detail

Gene description

TAIR ID: AT3G56200

Short description: Transmembrane amino acid transporter family protein

Pathogen responsiveness: -0.36

General responsiveness: -0.73

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G036448

Wheat: No orthologous gene

GO biological process

amino acid transport

GO cellular component

integral component of membrane, plasma membrane, membrane

GO molecular function

amino acid transmembrane transporter activity

Protein domain

Pfam	PF01490, Transmembrane amino acid transporter protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G53660, AT5G13790, AT3G16857, AT4G16110, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

14 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	2.26	3.45E-08
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.58	5.68E-07
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	1.62	2.18E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.07	1.30E-06
GSE20278	Col, RPL18-HF, control	Col, RPL18-HF, TuMV 10 d	-1.85	7.43E-03
GSE37269	Di2, WT, control	Di2, WT, TEV 21 d	-1.59	4.95E-02
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.91	3.41E-03
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.78	1.52E-02
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.51	2.68E-07
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	2.93	2.38E-02
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	1.81	1.51E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	2.77	8.39E-06
GSE5616	Col, WT, water 12 h	Col, WT, P. infestans 12 h	1.63	1.50E-07
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min	1.61	5.00E-02