Gene: AT3G54460
     

Gene description


TAIR ID: AT3G54460

Short description: SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G379804  

Wheat: No orthologous gene

GO biological process


unkown


GO cellular component


nucleus, plasmodesma


GO molecular function


helicase activity, ATP binding, zinc ion binding


Protein domain


PfamPF00271, Helicase conserved C-terminal domain
PfamPF00646, F-box domain
PfamPF07496, CW-type Zinc Finger
PfamPF00176, SNF2 family N-terminal domain
SMARTSM00256, FBOX
SMARTSM00490, HELICc
SMARTSM00487, DEXDc

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT3G16857, AT4G16110, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


2 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-1.555.26E-15
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-1.574.52E-15






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.