GO Enrichment Analysis of Co-expressed Genes with
AT3G54460
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 2 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 3 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 4 | GO:0045184: establishment of protein localization | 0.00E+00 |
| 5 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 6 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 7 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
| 8 | GO:0042793: transcription from plastid promoter | 1.55E-06 |
| 9 | GO:0009793: embryo development ending in seed dormancy | 1.93E-05 |
| 10 | GO:0006479: protein methylation | 5.21E-05 |
| 11 | GO:1901259: chloroplast rRNA processing | 1.64E-04 |
| 12 | GO:0009451: RNA modification | 2.30E-04 |
| 13 | GO:0034757: negative regulation of iron ion transport | 2.80E-04 |
| 14 | GO:0042659: regulation of cell fate specification | 2.80E-04 |
| 15 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 2.80E-04 |
| 16 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 2.80E-04 |
| 17 | GO:0080112: seed growth | 2.80E-04 |
| 18 | GO:0030198: extracellular matrix organization | 2.80E-04 |
| 19 | GO:0090558: plant epidermis development | 2.80E-04 |
| 20 | GO:1903866: palisade mesophyll development | 2.80E-04 |
| 21 | GO:1905039: carboxylic acid transmembrane transport | 2.80E-04 |
| 22 | GO:1905200: gibberellic acid transmembrane transport | 2.80E-04 |
| 23 | GO:0010063: positive regulation of trichoblast fate specification | 2.80E-04 |
| 24 | GO:0035987: endodermal cell differentiation | 2.80E-04 |
| 25 | GO:0006364: rRNA processing | 3.12E-04 |
| 26 | GO:0000373: Group II intron splicing | 4.05E-04 |
| 27 | GO:0009828: plant-type cell wall loosening | 4.38E-04 |
| 28 | GO:1900865: chloroplast RNA modification | 4.79E-04 |
| 29 | GO:0006535: cysteine biosynthetic process from serine | 5.60E-04 |
| 30 | GO:0006420: arginyl-tRNA aminoacylation | 6.14E-04 |
| 31 | GO:1901529: positive regulation of anion channel activity | 6.14E-04 |
| 32 | GO:0009967: positive regulation of signal transduction | 6.14E-04 |
| 33 | GO:0048255: mRNA stabilization | 6.14E-04 |
| 34 | GO:0019374: galactolipid metabolic process | 6.14E-04 |
| 35 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 6.14E-04 |
| 36 | GO:0010569: regulation of double-strand break repair via homologous recombination | 6.14E-04 |
| 37 | GO:0010271: regulation of chlorophyll catabolic process | 6.14E-04 |
| 38 | GO:0018026: peptidyl-lysine monomethylation | 6.14E-04 |
| 39 | GO:0009662: etioplast organization | 6.14E-04 |
| 40 | GO:1904143: positive regulation of carotenoid biosynthetic process | 6.14E-04 |
| 41 | GO:0080009: mRNA methylation | 6.14E-04 |
| 42 | GO:0010102: lateral root morphogenesis | 8.37E-04 |
| 43 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 9.96E-04 |
| 44 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 9.96E-04 |
| 45 | GO:0090708: specification of plant organ axis polarity | 9.96E-04 |
| 46 | GO:0080117: secondary growth | 9.96E-04 |
| 47 | GO:0044210: 'de novo' CTP biosynthetic process | 9.96E-04 |
| 48 | GO:0090391: granum assembly | 9.96E-04 |
| 49 | GO:0006518: peptide metabolic process | 9.96E-04 |
| 50 | GO:0042780: tRNA 3'-end processing | 9.96E-04 |
| 51 | GO:0001578: microtubule bundle formation | 9.96E-04 |
| 52 | GO:0019344: cysteine biosynthetic process | 1.29E-03 |
| 53 | GO:0010071: root meristem specification | 1.42E-03 |
| 54 | GO:0019953: sexual reproduction | 1.42E-03 |
| 55 | GO:0010239: chloroplast mRNA processing | 1.42E-03 |
| 56 | GO:0010306: rhamnogalacturonan II biosynthetic process | 1.42E-03 |
| 57 | GO:0010371: regulation of gibberellin biosynthetic process | 1.42E-03 |
| 58 | GO:0071215: cellular response to abscisic acid stimulus | 1.86E-03 |
| 59 | GO:0009664: plant-type cell wall organization | 1.89E-03 |
| 60 | GO:1900864: mitochondrial RNA modification | 1.91E-03 |
| 61 | GO:0051322: anaphase | 1.91E-03 |
| 62 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.91E-03 |
| 63 | GO:0030104: water homeostasis | 1.91E-03 |
| 64 | GO:0006021: inositol biosynthetic process | 1.91E-03 |
| 65 | GO:0008033: tRNA processing | 2.36E-03 |
| 66 | GO:0016123: xanthophyll biosynthetic process | 2.43E-03 |
| 67 | GO:0009247: glycolipid biosynthetic process | 2.43E-03 |
| 68 | GO:0016120: carotene biosynthetic process | 2.43E-03 |
| 69 | GO:0048497: maintenance of floral organ identity | 2.43E-03 |
| 70 | GO:0009734: auxin-activated signaling pathway | 2.64E-03 |
| 71 | GO:0016554: cytidine to uridine editing | 3.00E-03 |
| 72 | GO:0009913: epidermal cell differentiation | 3.00E-03 |
| 73 | GO:1902456: regulation of stomatal opening | 3.00E-03 |
| 74 | GO:0048831: regulation of shoot system development | 3.00E-03 |
| 75 | GO:0009643: photosynthetic acclimation | 3.00E-03 |
| 76 | GO:0010583: response to cyclopentenone | 3.35E-03 |
| 77 | GO:0010310: regulation of hydrogen peroxide metabolic process | 3.62E-03 |
| 78 | GO:2000067: regulation of root morphogenesis | 3.62E-03 |
| 79 | GO:0009955: adaxial/abaxial pattern specification | 3.62E-03 |
| 80 | GO:0042026: protein refolding | 3.62E-03 |
| 81 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.62E-03 |
| 82 | GO:0006458: 'de novo' protein folding | 3.62E-03 |
| 83 | GO:0048509: regulation of meristem development | 3.62E-03 |
| 84 | GO:0006955: immune response | 4.26E-03 |
| 85 | GO:0048437: floral organ development | 4.26E-03 |
| 86 | GO:0006401: RNA catabolic process | 4.26E-03 |
| 87 | GO:0010027: thylakoid membrane organization | 4.53E-03 |
| 88 | GO:0010029: regulation of seed germination | 4.79E-03 |
| 89 | GO:0009642: response to light intensity | 4.95E-03 |
| 90 | GO:0006402: mRNA catabolic process | 4.95E-03 |
| 91 | GO:0019375: galactolipid biosynthetic process | 4.95E-03 |
| 92 | GO:0055075: potassium ion homeostasis | 4.95E-03 |
| 93 | GO:0000105: histidine biosynthetic process | 4.95E-03 |
| 94 | GO:0052543: callose deposition in cell wall | 4.95E-03 |
| 95 | GO:0006508: proteolysis | 5.44E-03 |
| 96 | GO:0001510: RNA methylation | 5.67E-03 |
| 97 | GO:0019430: removal of superoxide radicals | 5.67E-03 |
| 98 | GO:0010497: plasmodesmata-mediated intercellular transport | 5.67E-03 |
| 99 | GO:0032544: plastid translation | 5.67E-03 |
| 100 | GO:0000160: phosphorelay signal transduction system | 6.21E-03 |
| 101 | GO:0048589: developmental growth | 6.43E-03 |
| 102 | GO:0000902: cell morphogenesis | 6.43E-03 |
| 103 | GO:0006865: amino acid transport | 7.16E-03 |
| 104 | GO:2000280: regulation of root development | 7.22E-03 |
| 105 | GO:0031425: chloroplast RNA processing | 7.22E-03 |
| 106 | GO:0006949: syncytium formation | 8.04E-03 |
| 107 | GO:0048829: root cap development | 8.04E-03 |
| 108 | GO:0045036: protein targeting to chloroplast | 8.04E-03 |
| 109 | GO:0016441: posttranscriptional gene silencing | 8.04E-03 |
| 110 | GO:0015770: sucrose transport | 8.90E-03 |
| 111 | GO:0009750: response to fructose | 8.90E-03 |
| 112 | GO:0016485: protein processing | 8.90E-03 |
| 113 | GO:0006790: sulfur compound metabolic process | 9.79E-03 |
| 114 | GO:0012501: programmed cell death | 9.79E-03 |
| 115 | GO:0045037: protein import into chloroplast stroma | 9.79E-03 |
| 116 | GO:0010152: pollen maturation | 9.79E-03 |
| 117 | GO:0009691: cytokinin biosynthetic process | 1.07E-02 |
| 118 | GO:0009826: unidimensional cell growth | 1.08E-02 |
| 119 | GO:0009658: chloroplast organization | 1.13E-02 |
| 120 | GO:0080188: RNA-directed DNA methylation | 1.26E-02 |
| 121 | GO:0009901: anther dehiscence | 1.26E-02 |
| 122 | GO:0046854: phosphatidylinositol phosphorylation | 1.26E-02 |
| 123 | GO:0009736: cytokinin-activated signaling pathway | 1.31E-02 |
| 124 | GO:0006833: water transport | 1.37E-02 |
| 125 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.56E-02 |
| 126 | GO:0051302: regulation of cell division | 1.58E-02 |
| 127 | GO:0010073: meristem maintenance | 1.58E-02 |
| 128 | GO:0048367: shoot system development | 1.60E-02 |
| 129 | GO:0010431: seed maturation | 1.68E-02 |
| 130 | GO:0061077: chaperone-mediated protein folding | 1.68E-02 |
| 131 | GO:0003333: amino acid transmembrane transport | 1.68E-02 |
| 132 | GO:0016998: cell wall macromolecule catabolic process | 1.68E-02 |
| 133 | GO:0015992: proton transport | 1.68E-02 |
| 134 | GO:0016226: iron-sulfur cluster assembly | 1.80E-02 |
| 135 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.91E-02 |
| 136 | GO:0006396: RNA processing | 1.92E-02 |
| 137 | GO:0048443: stamen development | 2.03E-02 |
| 138 | GO:0010091: trichome branching | 2.03E-02 |
| 139 | GO:0042127: regulation of cell proliferation | 2.03E-02 |
| 140 | GO:0009306: protein secretion | 2.03E-02 |
| 141 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.15E-02 |
| 142 | GO:0070417: cellular response to cold | 2.15E-02 |
| 143 | GO:0000226: microtubule cytoskeleton organization | 2.27E-02 |
| 144 | GO:0010501: RNA secondary structure unwinding | 2.27E-02 |
| 145 | GO:0010087: phloem or xylem histogenesis | 2.27E-02 |
| 146 | GO:0010118: stomatal movement | 2.27E-02 |
| 147 | GO:0010305: leaf vascular tissue pattern formation | 2.39E-02 |
| 148 | GO:0048868: pollen tube development | 2.39E-02 |
| 149 | GO:0009741: response to brassinosteroid | 2.39E-02 |
| 150 | GO:0009646: response to absence of light | 2.52E-02 |
| 151 | GO:0048544: recognition of pollen | 2.52E-02 |
| 152 | GO:0007018: microtubule-based movement | 2.52E-02 |
| 153 | GO:0006814: sodium ion transport | 2.52E-02 |
| 154 | GO:0009845: seed germination | 2.53E-02 |
| 155 | GO:0048825: cotyledon development | 2.65E-02 |
| 156 | GO:0009749: response to glucose | 2.65E-02 |
| 157 | GO:0009851: auxin biosynthetic process | 2.65E-02 |
| 158 | GO:0031047: gene silencing by RNA | 2.91E-02 |
| 159 | GO:0016032: viral process | 2.91E-02 |
| 160 | GO:0032502: developmental process | 2.91E-02 |
| 161 | GO:0016036: cellular response to phosphate starvation | 3.01E-02 |
| 162 | GO:0030163: protein catabolic process | 3.05E-02 |
| 163 | GO:0040008: regulation of growth | 3.08E-02 |
| 164 | GO:0045490: pectin catabolic process | 3.22E-02 |
| 165 | GO:0000910: cytokinesis | 3.47E-02 |
| 166 | GO:0009739: response to gibberellin | 3.61E-02 |
| 167 | GO:0007166: cell surface receptor signaling pathway | 3.68E-02 |
| 168 | GO:0015995: chlorophyll biosynthetic process | 4.06E-02 |
| 169 | GO:0006468: protein phosphorylation | 4.36E-02 |
| 170 | GO:0048481: plant ovule development | 4.37E-02 |
| 171 | GO:0009733: response to auxin | 4.83E-02 |
| 172 | GO:0009416: response to light stimulus | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 2 | GO:0005201: extracellular matrix structural constituent | 0.00E+00 |
| 3 | GO:0071633: dihydroceramidase activity | 0.00E+00 |
| 4 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 5 | GO:0016428: tRNA (cytosine-5-)-methyltransferase activity | 0.00E+00 |
| 6 | GO:0008237: metallopeptidase activity | 3.77E-05 |
| 7 | GO:0004222: metalloendopeptidase activity | 9.44E-05 |
| 8 | GO:0004124: cysteine synthase activity | 1.64E-04 |
| 9 | GO:0003723: RNA binding | 2.51E-04 |
| 10 | GO:1905201: gibberellin transmembrane transporter activity | 2.80E-04 |
| 11 | GO:0042834: peptidoglycan binding | 2.80E-04 |
| 12 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 2.80E-04 |
| 13 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 2.80E-04 |
| 14 | GO:0052381: tRNA dimethylallyltransferase activity | 2.80E-04 |
| 15 | GO:0016274: protein-arginine N-methyltransferase activity | 2.80E-04 |
| 16 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.80E-04 |
| 17 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.80E-04 |
| 18 | GO:0008173: RNA methyltransferase activity | 3.35E-04 |
| 19 | GO:0004519: endonuclease activity | 3.92E-04 |
| 20 | GO:0004047: aminomethyltransferase activity | 6.14E-04 |
| 21 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 6.14E-04 |
| 22 | GO:0052832: inositol monophosphate 3-phosphatase activity | 6.14E-04 |
| 23 | GO:0000774: adenyl-nucleotide exchange factor activity | 6.14E-04 |
| 24 | GO:0008934: inositol monophosphate 1-phosphatase activity | 6.14E-04 |
| 25 | GO:0052833: inositol monophosphate 4-phosphatase activity | 6.14E-04 |
| 26 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 6.14E-04 |
| 27 | GO:0005078: MAP-kinase scaffold activity | 6.14E-04 |
| 28 | GO:0009884: cytokinin receptor activity | 6.14E-04 |
| 29 | GO:0004814: arginine-tRNA ligase activity | 6.14E-04 |
| 30 | GO:0017150: tRNA dihydrouridine synthase activity | 9.96E-04 |
| 31 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 9.96E-04 |
| 32 | GO:0016805: dipeptidase activity | 9.96E-04 |
| 33 | GO:0005034: osmosensor activity | 9.96E-04 |
| 34 | GO:0008508: bile acid:sodium symporter activity | 1.42E-03 |
| 35 | GO:0001872: (1->3)-beta-D-glucan binding | 1.42E-03 |
| 36 | GO:0009041: uridylate kinase activity | 1.42E-03 |
| 37 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 1.42E-03 |
| 38 | GO:0003883: CTP synthase activity | 1.42E-03 |
| 39 | GO:0004176: ATP-dependent peptidase activity | 1.56E-03 |
| 40 | GO:0030570: pectate lyase activity | 1.86E-03 |
| 41 | GO:0010011: auxin binding | 1.91E-03 |
| 42 | GO:0010328: auxin influx transmembrane transporter activity | 1.91E-03 |
| 43 | GO:0004930: G-protein coupled receptor activity | 1.91E-03 |
| 44 | GO:0016279: protein-lysine N-methyltransferase activity | 1.91E-03 |
| 45 | GO:0008168: methyltransferase activity | 2.28E-03 |
| 46 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.43E-03 |
| 47 | GO:0004888: transmembrane signaling receptor activity | 2.43E-03 |
| 48 | GO:0005275: amine transmembrane transporter activity | 2.43E-03 |
| 49 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 2.43E-03 |
| 50 | GO:0001085: RNA polymerase II transcription factor binding | 2.54E-03 |
| 51 | GO:0004784: superoxide dismutase activity | 3.00E-03 |
| 52 | GO:0046872: metal ion binding | 3.50E-03 |
| 53 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.62E-03 |
| 54 | GO:0019900: kinase binding | 3.62E-03 |
| 55 | GO:0004427: inorganic diphosphatase activity | 4.26E-03 |
| 56 | GO:0019843: rRNA binding | 4.31E-03 |
| 57 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 5.08E-03 |
| 58 | GO:0003724: RNA helicase activity | 5.67E-03 |
| 59 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 6.83E-03 |
| 60 | GO:0004673: protein histidine kinase activity | 8.04E-03 |
| 61 | GO:0044183: protein binding involved in protein folding | 8.90E-03 |
| 62 | GO:0008515: sucrose transmembrane transporter activity | 8.90E-03 |
| 63 | GO:0000175: 3'-5'-exoribonuclease activity | 1.07E-02 |
| 64 | GO:0000155: phosphorelay sensor kinase activity | 1.07E-02 |
| 65 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.17E-02 |
| 66 | GO:0016887: ATPase activity | 1.18E-02 |
| 67 | GO:0051119: sugar transmembrane transporter activity | 1.26E-02 |
| 68 | GO:0004190: aspartic-type endopeptidase activity | 1.26E-02 |
| 69 | GO:0003777: microtubule motor activity | 1.45E-02 |
| 70 | GO:0015171: amino acid transmembrane transporter activity | 1.45E-02 |
| 71 | GO:0051087: chaperone binding | 1.58E-02 |
| 72 | GO:0043424: protein histidine kinase binding | 1.58E-02 |
| 73 | GO:0008408: 3'-5' exonuclease activity | 1.68E-02 |
| 74 | GO:0003779: actin binding | 1.81E-02 |
| 75 | GO:0051082: unfolded protein binding | 1.86E-02 |
| 76 | GO:0008026: ATP-dependent helicase activity | 1.98E-02 |
| 77 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.19E-02 |
| 78 | GO:0004527: exonuclease activity | 2.39E-02 |
| 79 | GO:0003713: transcription coactivator activity | 2.39E-02 |
| 80 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.40E-02 |
| 81 | GO:0005524: ATP binding | 2.58E-02 |
| 82 | GO:0004672: protein kinase activity | 2.61E-02 |
| 83 | GO:0019901: protein kinase binding | 2.65E-02 |
| 84 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.01E-02 |
| 85 | GO:0000156: phosphorelay response regulator activity | 3.05E-02 |
| 86 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 3.33E-02 |
| 87 | GO:0008017: microtubule binding | 3.37E-02 |
| 88 | GO:0030247: polysaccharide binding | 4.06E-02 |
| 89 | GO:0004004: ATP-dependent RNA helicase activity | 4.06E-02 |
| 90 | GO:0042802: identical protein binding | 4.09E-02 |
| 91 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.37E-02 |
| 92 | GO:0015238: drug transmembrane transporter activity | 4.52E-02 |
| 93 | GO:0005096: GTPase activator activity | 4.52E-02 |
| 94 | GO:0005215: transporter activity | 4.73E-02 |