Gene: AT3G44260
     

Gene description


TAIR ID: AT3G44260

Short description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Pathogen responsiveness: 0.35

General responsiveness: 0.44

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


defense response to bacterium, response to wounding, regulation of transcription, DNA-templated, transcription, negative regulation of translation, nuclear-transcribed mRNA poly(A) tail shortening, RNA modification, defense response to insect, exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay


GO cellular component


nucleus, CCR4-NOT core complex, P-body


GO molecular function


poly(A)-specific ribonuclease activity, 3'-5' exonuclease activity, RNA binding, metal ion binding, ribonuclease activity


Protein domain


PfamPF04857, CAF1 family ribonuclease

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G13790, AT3G14230, AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


26 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, ataf1, controlCol, ataf1, Bg h1.865.28E-06
GSE16472Col, WT, Flg22 0 minCol, WT, Flg22 30 min3.281.05E-02
GSE18329Col, WT, controlCol, WT, Hpa noco2 96 h2.571.21E-13
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h2.164.01E-05
GSE20278Col, RPL18-HF, control, polysomal RNACol, RPL18-HF, TuMV 10 d, polysomal RNA-1.593.72E-02
GSE2169Col, WT, waterCol, WT, chitin 30 min2.079.62E-07
GSE2169Col, rre1, waterCol, rre1, chitin 30 min2.757.66E-09
GSE2169Col, rre2, waterCol, rre2, chitin 30 min2.406.70E-08
GSE2538Col, WT, controlCol, WT, crab shell chitin 30 min2.762.84E-07
GSE2538Col, WT, controlCol, WT, purified chitin octamer 30 min2.753.35E-07
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.951.02E-03
GSE37269Wt1, WT, controlWt1, WT, TEV 21 d-1.512.48E-02
GSE40544Col, WT, controlCol, WT, PstDC3000 EV1.657.28E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h1.521.84E-05
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h2.503.12E-07
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h2.778.04E-08
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h3.588.53E-10
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h2.084.69E-06
GSE4746Col, WT, water 30 minCol, WT, chitooctaose 30 min2.541.95E-04
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h2.058.73E-03
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h3.022.10E-05
GSE8319Col, WT, controlCol, WT, chitooctaose 30 min3.362.84E-15
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h2.084.13E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min1.921.28E-02
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 2-4 h1.918.84E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 90-105 min1.531.19E-02






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.