Gene description
Orthologous
GO biological process
defense response to bacterium, response to wounding, regulation of transcription, DNA-templated, transcription, negative regulation of translation, nuclear-transcribed mRNA poly(A) tail shortening, RNA modification, defense response to insect, exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO cellular component
nucleus, CCR4-NOT core complex, P-body
GO molecular function
poly(A)-specific ribonuclease activity, 3'-5' exonuclease activity, RNA binding, metal ion binding, ribonuclease activity
Metabolic pathway
Not involved in metabolic pathway
Coexpression network
Differentially expressed condition
26 conditions
Series | Control | Treatment | Log2FC | Adj. P value |
---|---|---|---|---|
GSE12856 | Col, ataf1, control | Col, ataf1, Bg h | 1.86 | 5.28E-06 |
GSE16472 | Col, WT, Flg22 0 min | Col, WT, Flg22 30 min | 3.28 | 1.05E-02 |
GSE18329 | Col, WT, control | Col, WT, Hpa noco2 96 h | 2.57 | 1.21E-13 |
GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | 2.16 | 4.01E-05 |
GSE20278 | Col, RPL18-HF, control, polysomal RNA | Col, RPL18-HF, TuMV 10 d, polysomal RNA | -1.59 | 3.72E-02 |
GSE2169 | Col, WT, water | Col, WT, chitin 30 min | 2.07 | 9.62E-07 |
GSE2169 | Col, rre1, water | Col, rre1, chitin 30 min | 2.75 | 7.66E-09 |
GSE2169 | Col, rre2, water | Col, rre2, chitin 30 min | 2.40 | 6.70E-08 |
GSE2538 | Col, WT, control | Col, WT, crab shell chitin 30 min | 2.76 | 2.84E-07 |
GSE2538 | Col, WT, control | Col, WT, purified chitin octamer 30 min | 2.75 | 3.35E-07 |
GSE37269 | Ei2, WT, control | Ei2, WT, TEV 21 d | -1.95 | 1.02E-03 |
GSE37269 | Wt1, WT, control | Wt1, WT, TEV 21 d | -1.51 | 2.48E-02 |
GSE40544 | Col, WT, control | Col, WT, PstDC3000 EV | 1.65 | 7.28E-03 |
GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 4 h | 1.52 | 1.84E-05 |
GSE45214 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 4 h | 2.50 | 3.12E-07 |
GSE45214 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | 2.77 | 8.04E-08 |
GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | 3.58 | 8.53E-10 |
GSE45214 | Col, npr1, PstDC3000 AvrRpt2 0 h | Col, npr1, PstDC3000 AvrRpt2 4 h | 2.08 | 4.69E-06 |
GSE4746 | Col, WT, water 30 min | Col, WT, chitooctaose 30 min | 2.54 | 1.95E-04 |
GSE50526 | Col, WT, mock 9 h | Col, WT, A. brassicicola 9 h | 2.05 | 8.73E-03 |
GSE6556 | Col, gh3.5, control | Col, gh3.5, PstDC3000 AvrRpt2 48 h | 3.02 | 2.10E-05 |
GSE8319 | Col, WT, control | Col, WT, chitooctaose 30 min | 3.36 | 2.84E-15 |
GSE9674 | Ws-4, AtMYB30 ox, control | Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h | 2.08 | 4.13E-03 |
GSE9674 | Ws-4, AtMYB30 ox, control | Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min | 1.92 | 1.28E-02 |
GSE9674 | Ws-4, WT, control | Ws-4, WT, Xanthomonas strain Xcc147 2-4 h | 1.91 | 8.84E-03 |
GSE9674 | Ws-4, WT, control | Ws-4, WT, Xanthomonas strain Xcc147 90-105 min | 1.53 | 1.19E-02 |
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