gene detail

Gene description

TAIR ID: AT3G26650

Short description: glyceraldehyde 3-phosphate dehydrogenase A subunit

Pathogen responsiveness: -0.90

General responsiveness: 2.83

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G162845

Wheat: No orthologous gene

GO biological process

glycolytic process, reductive pentose-phosphate cycle, response to sucrose, response to cold, response to light stimulus, oxidation-reduction process, glucose metabolic process

GO cellular component

membrane, chloroplast stroma, chloroplast envelope, chloroplast membrane, chloroplast, apoplast, chloroplast thylakoid membrane

GO molecular function

protein binding, glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity

Protein domain

Pfam	PF02800, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Pfam	PF00044, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
SMART	SM00846, Gp_dh_N

Metabolic pathway

PHOTOALL-PWY: oxygenic photosynthesis
GLUCONEO-PWY: gluconeogenesis I
CALVIN-PWY: Calvin-Benson-Bassham cycle
PWY-5484: glycolysis II (from fructose-6P)
PWY-5723: Rubisco shunt
SUCSYN-PWY: sucrose biosynthesis I (from photosynthesis)

KEGG pathway

PATH:ath01200: Carbon metabolism
PATH:ath00710: Carbon fixation in photosynthetic organisms

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 8

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

11 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.96	3.91E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.97	1.06E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.74	7.07E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.60	2.46E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.45	4.38E-11
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.89	1.06E-12
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.81	1.14E-11
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.68	1.29E-09
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.67	1.44E-10
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.63	8.54E-10
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.68	3.50E-10