gene detail

Gene description

TAIR ID: AT3G25230

Short description: rotamase FKBP 1

Pathogen responsiveness: -0.37

General responsiveness: 0.65

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

response to cytokinin, chaperone-mediated protein folding, seed germination, response to heat, cellular heat acclimation, response to osmotic stress, response to cadmium ion, response to wounding

GO cellular component

cytoplasm, cytosol, nucleus, cell periphery

GO molecular function

calmodulin binding, peptidyl-prolyl cis-trans isomerase activity, FK506 binding, protein binding

Protein domain

Pfam	PF00254, FKBP-type peptidyl-prolyl cis-trans isomerase
Pfam	PF00515, Tetratricopeptide repeat
SMART	SM00028, TPR

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G51600

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

14 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	2.03	2.61E-07
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.58	1.83E-06
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	1.68	7.04E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.00	5.23E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.93	6.76E-11
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.60	1.06E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.59	5.00E-11
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	3.16	1.35E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	2.31	4.41E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.51	5.59E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min	2.65	3.99E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 2-4 h	2.65	2.54E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	3.06	2.06E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	3.04	4.85E-04