Gene: AT3G23780
     


Gene description


TAIR ID: AT3G23780

Short description: nuclear RNA polymerase D2A

Pathogen responsiveness: NA

General responsiveness: NA

GO biological process


gene silencing by RNA, defense response to fungus, posttranscriptional gene silencing by RNA, production of siRNA involved in RNA interference, DNA methylation, regulation of transcription, DNA-templated, regulation of immune response, transcription


GO cellular component


nucleus, nuclear heterochromatin, DNA-directed RNA polymerase I complex, DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase IV complex


GO molecular function


metal ion binding, RNA polymerase I activity, DNA binding, DNA-directed 5'-3' RNA polymerase activity, protein binding, ribonucleoside binding


Protein domain


PfamPF04567, RNA polymerase Rpb2, domain 5
PfamPF00562, RNA polymerase Rpb2, domain 6
PfamPF04561, RNA polymerase Rpb2, domain 2
PfamPF04563, RNA polymerase beta subunit
PfamPF04565, RNA polymerase Rpb2, domain 3
PfamPF04560, RNA polymerase Rpb2, domain 7
PfamPF04566, RNA polymerase Rpb2, domain 4

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G11260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 6

click to view PPI network

Differentially expressed condition


3 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.515.92E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-1.755.22E-11
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-1.511.91E-10






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