gene detail

Gene description

TAIR ID: AT3G20810

Short description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Pathogen responsiveness: 0.70

General responsiveness: 0.50

Orthologous

Rice:

OS09G0489200

Maize:

GRMZM2G052908

Wheat: No orthologous gene

GO biological process

histone H3-K36 demethylation, flower development, oxidation-reduction process, regulation of circadian rhythm, circadian rhythm

GO cellular component

nucleus, cytoplasm

GO molecular function

histone methyltransferase activity (H3-K36 specific), dioxygenase activity, metal ion binding, transcription factor activity, sequence-specific DNA binding, protein binding

Protein domain

Pfam	PF13621, Cupin-like domain
SMART	SM00558, JmjC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

16 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	3.37	2.04E-05
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	3.35	2.46E-05
GSE17464	Laer, control	Laer, PstDC3000 12 h	3.01	6.78E-07
GSE17464	Penta, control	Penta, PstDC3000 12 h	3.21	1.11E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	4.92	5.75E-18
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	6.07	2.90E-20
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	5.18	1.57E-18
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	6.51	9.85E-21
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.64	1.06E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.61	2.11E-05
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.30	9.09E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	3.29	1.11E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.41	4.68E-14
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-2.21	2.51E-02
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.95	2.54E-06
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.95	1.38E-02