gene detail

Gene description

TAIR ID: AT3G17810

Short description: pyrimidine 1

Pathogen responsiveness: -0.37

General responsiveness: 0.19

Orthologous

Rice:

OS02G0736400

Maize:

GRMZM2G181505

Wheat: No orthologous gene

GO biological process

uracil catabolic process, oxidation-reduction process, cellular response to nitrogen levels, beta-alanine biosynthetic process, 'de novo' pyrimidine nucleobase biosynthetic process

GO cellular component

chloroplast stroma, chloroplast, plasma membrane, plastid

GO molecular function

dihydropyrimidine dehydrogenase (NADP+) activity, oxidoreductase activity, acting on the CH-CH group of donors

Protein domain

Pfam	PF01180, Dihydroorotate dehydrogenase

Metabolic pathway

PWY-6430: thymine degradation
PWY-3982: uracil degradation I (reductive)

KEGG pathway

PATH:ath00240: Pyrimidine metabolism
PATH:ath00410: beta-Alanine metabolism
PATH:ath00770: Pantothenate and CoA biosynthesis

Transcriptional regulation

Regulator:
AT5G13790, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	1.85	2.13E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	2.34	1.78E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	2.01	9.48E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	3.29	6.12E-11
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.78	1.42E-09
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.80	5.15E-10
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	3.06	6.80E-05
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.19	2.94E-06
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	2.42	3.80E-07
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	2.79	7.68E-09
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	2.40	3.64E-07
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.92	6.27E-05
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	1.89	7.96E-05
GSE5616	Col, WT, water 12 h	Col, WT, P. infestans 12 h	1.50	7.70E-07
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	1.93	1.13E-04