gene detail

Gene description

TAIR ID: AT3G14420

Short description: Aldolase-type TIM barrel family protein

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TA.28197.1.S1_AT

GO biological process

defense response to bacterium, oxidation-reduction process, hydrogen peroxide biosynthetic process, oxidative photosynthetic carbon pathway, response to cytokinin

GO cellular component

cytosolic ribosome, apoplast, peroxisome, chloroplast, chloroplast stroma, membrane, plasmodesma, nucleus

GO molecular function

oxidoreductase activity, glycolate oxidase activity, FMN binding, medium-chain-(S)-2-hydroxy-acid oxidase activity, long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity, very-long-chain-(S)-2-hydroxy-acid oxidase activity

Protein domain

Pfam	PF01070, FMN-dependent dehydrogenase

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath01200: Carbon metabolism
PATH:ath00630: Glyoxylate and dicarboxylate metabolism
PATH:ath04146: Peroxisome

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.67	7.02E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.53	3.84E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.52	2.40E-12
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-3.37	3.66E-18
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-2.50	1.62E-10
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.46	1.65E-11
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.73	2.03E-06
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.43	2.83E-11
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.31	9.73E-11
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	-2.22	5.08E-09
GSE56094	Col, WT, control 6 h	Col, WT, hrpA- 6 h	-1.87	1.29E-06
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.96	1.50E-07
GSE56094	Col, WT, control 7 h	Col, WT, hrpA- 7 h	-1.64	1.34E-05
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-2.21	1.05E-09
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-2.34	1.24E-09
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.03	1.73E-08
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-2.15	1.81E-08