co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G14420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0016118: carotenoid catabolic process	0.00E+00
4	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
5	GO:0015882: L-ascorbic acid transport	0.00E+00
6	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
9	GO:0070125: mitochondrial translational elongation	0.00E+00
10	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
11	GO:0015979: photosynthesis	4.17E-23
12	GO:0009768: photosynthesis, light harvesting in photosystem I	8.84E-17
13	GO:0018298: protein-chromophore linkage	2.38E-15
14	GO:0010196: nonphotochemical quenching	4.02E-11
15	GO:0010207: photosystem II assembly	4.22E-11
16	GO:0009773: photosynthetic electron transport in photosystem I	1.45E-09
17	GO:0042549: photosystem II stabilization	2.28E-09
18	GO:0010114: response to red light	3.83E-09
19	GO:0006000: fructose metabolic process	8.84E-09
20	GO:0009769: photosynthesis, light harvesting in photosystem II	1.00E-08
21	GO:0009645: response to low light intensity stimulus	1.00E-08
22	GO:0010218: response to far red light	3.77E-08
23	GO:0009644: response to high light intensity	1.73E-07
24	GO:0006094: gluconeogenesis	3.12E-07
25	GO:0019253: reductive pentose-phosphate cycle	4.18E-07
26	GO:0009416: response to light stimulus	6.81E-07
27	GO:0015995: chlorophyll biosynthetic process	7.74E-07
28	GO:0035304: regulation of protein dephosphorylation	1.70E-06
29	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.70E-06
30	GO:0009637: response to blue light	1.93E-06
31	GO:0009642: response to light intensity	2.48E-06
32	GO:0006002: fructose 6-phosphate metabolic process	3.63E-06
33	GO:0010206: photosystem II repair	5.10E-06
34	GO:0090391: granum assembly	6.26E-06
35	GO:0019684: photosynthesis, light reaction	1.19E-05
36	GO:0006546: glycine catabolic process	2.66E-05
37	GO:0006021: inositol biosynthetic process	2.66E-05
38	GO:0016123: xanthophyll biosynthetic process	4.30E-05
39	GO:0009269: response to desiccation	5.45E-05
40	GO:0010189: vitamin E biosynthetic process	8.84E-05
41	GO:0055114: oxidation-reduction process	1.33E-04
42	GO:0006096: glycolytic process	1.61E-04
43	GO:0009409: response to cold	1.78E-04
44	GO:0051775: response to redox state	1.88E-04
45	GO:0071277: cellular response to calcium ion	1.88E-04
46	GO:0000481: maturation of 5S rRNA	1.88E-04
47	GO:0080093: regulation of photorespiration	1.88E-04
48	GO:0043609: regulation of carbon utilization	1.88E-04
49	GO:0031998: regulation of fatty acid beta-oxidation	1.88E-04
50	GO:0010028: xanthophyll cycle	1.88E-04
51	GO:0034337: RNA folding	1.88E-04
52	GO:0006098: pentose-phosphate shunt	2.29E-04
53	GO:0090333: regulation of stomatal closure	2.29E-04
54	GO:0010027: thylakoid membrane organization	2.64E-04
55	GO:0010205: photoinhibition	2.73E-04
56	GO:0042742: defense response to bacterium	3.55E-04
57	GO:0043085: positive regulation of catalytic activity	3.73E-04
58	GO:0009629: response to gravity	4.24E-04
59	GO:0016124: xanthophyll catabolic process	4.24E-04
60	GO:0010042: response to manganese ion	4.24E-04
61	GO:0000256: allantoin catabolic process	4.24E-04
62	GO:0097054: L-glutamate biosynthetic process	4.24E-04
63	GO:0006729: tetrahydrobiopterin biosynthetic process	4.24E-04
64	GO:0016121: carotene catabolic process	4.24E-04
65	GO:0006790: sulfur compound metabolic process	4.27E-04
66	GO:0005986: sucrose biosynthetic process	4.86E-04
67	GO:0006108: malate metabolic process	4.86E-04
68	GO:0006006: glucose metabolic process	4.86E-04
69	GO:0034599: cellular response to oxidative stress	5.40E-04
70	GO:0046854: phosphatidylinositol phosphorylation	6.12E-04
71	GO:1902448: positive regulation of shade avoidance	6.92E-04
72	GO:0010136: ureide catabolic process	6.92E-04
73	GO:0005975: carbohydrate metabolic process	9.05E-04
74	GO:0006107: oxaloacetate metabolic process	9.86E-04
75	GO:0006537: glutamate biosynthetic process	9.86E-04
76	GO:0006145: purine nucleobase catabolic process	9.86E-04
77	GO:0042823: pyridoxal phosphate biosynthetic process	9.86E-04
78	GO:0006020: inositol metabolic process	9.86E-04
79	GO:0071484: cellular response to light intensity	9.86E-04
80	GO:0009658: chloroplast organization	1.02E-03
81	GO:0009735: response to cytokinin	1.24E-03
82	GO:0019464: glycine decarboxylation via glycine cleavage system	1.31E-03
83	GO:0009765: photosynthesis, light harvesting	1.31E-03
84	GO:0006109: regulation of carbohydrate metabolic process	1.31E-03
85	GO:0045727: positive regulation of translation	1.31E-03
86	GO:0015994: chlorophyll metabolic process	1.31E-03
87	GO:0030104: water homeostasis	1.31E-03
88	GO:0006734: NADH metabolic process	1.31E-03
89	GO:0019676: ammonia assimilation cycle	1.31E-03
90	GO:0015976: carbon utilization	1.31E-03
91	GO:0006662: glycerol ether metabolic process	1.46E-03
92	GO:0006814: sodium ion transport	1.57E-03
93	GO:0010236: plastoquinone biosynthetic process	1.66E-03
94	GO:0006097: glyoxylate cycle	1.66E-03
95	GO:0019252: starch biosynthetic process	1.68E-03
96	GO:0046855: inositol phosphate dephosphorylation	2.05E-03
97	GO:0009635: response to herbicide	2.05E-03
98	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.05E-03
99	GO:0071470: cellular response to osmotic stress	2.46E-03
100	GO:0009772: photosynthetic electron transport in photosystem II	2.90E-03
101	GO:0030026: cellular manganese ion homeostasis	2.90E-03
102	GO:1900057: positive regulation of leaf senescence	2.90E-03
103	GO:0007623: circadian rhythm	3.16E-03
104	GO:0046686: response to cadmium ion	3.27E-03
105	GO:0009704: de-etiolation	3.36E-03
106	GO:0032508: DNA duplex unwinding	3.36E-03
107	GO:0031540: regulation of anthocyanin biosynthetic process	3.36E-03
108	GO:0016559: peroxisome fission	3.36E-03
109	GO:0009813: flavonoid biosynthetic process	3.53E-03
110	GO:0071482: cellular response to light stimulus	3.84E-03
111	GO:0032544: plastid translation	3.84E-03
112	GO:0009853: photorespiration	4.26E-03
113	GO:0098656: anion transmembrane transport	4.35E-03
114	GO:0009245: lipid A biosynthetic process	4.35E-03
115	GO:0006754: ATP biosynthetic process	4.35E-03
116	GO:0006099: tricarboxylic acid cycle	4.45E-03
117	GO:0009688: abscisic acid biosynthetic process	5.42E-03
118	GO:0009744: response to sucrose	5.48E-03
119	GO:0000272: polysaccharide catabolic process	5.99E-03
120	GO:0018119: peptidyl-cysteine S-nitrosylation	5.99E-03
121	GO:0005983: starch catabolic process	6.58E-03
122	GO:0009793: embryo development ending in seed dormancy	7.11E-03
123	GO:0009767: photosynthetic electron transport chain	7.19E-03
124	GO:0080167: response to karrikin	7.22E-03
125	GO:0010224: response to UV-B	7.64E-03
126	GO:0010020: chloroplast fission	7.82E-03
127	GO:0046688: response to copper ion	8.47E-03
128	GO:0005985: sucrose metabolic process	8.47E-03
129	GO:0090351: seedling development	8.47E-03
130	GO:0045454: cell redox homeostasis	9.09E-03
131	GO:0006833: water transport	9.14E-03
132	GO:0019748: secondary metabolic process	1.20E-02
133	GO:0071215: cellular response to abscisic acid stimulus	1.28E-02
134	GO:0009561: megagametogenesis	1.35E-02
135	GO:0016117: carotenoid biosynthetic process	1.43E-02
136	GO:0042631: cellular response to water deprivation	1.51E-02
137	GO:0042335: cuticle development	1.51E-02
138	GO:0034220: ion transmembrane transport	1.51E-02
139	GO:0010182: sugar mediated signaling pathway	1.60E-02
140	GO:0015986: ATP synthesis coupled proton transport	1.68E-02
141	GO:0009791: post-embryonic development	1.77E-02
142	GO:0008654: phospholipid biosynthetic process	1.77E-02
143	GO:0071554: cell wall organization or biogenesis	1.85E-02
144	GO:0051607: defense response to virus	2.31E-02
145	GO:0009627: systemic acquired resistance	2.61E-02
146	GO:0048573: photoperiodism, flowering	2.71E-02
147	GO:0016311: dephosphorylation	2.81E-02
148	GO:0006499: N-terminal protein myristoylation	3.12E-02
149	GO:0006811: ion transport	3.12E-02
150	GO:0006810: transport	3.13E-02
151	GO:0010119: regulation of stomatal movement	3.23E-02
152	GO:0007568: aging	3.23E-02
153	GO:0016051: carbohydrate biosynthetic process	3.45E-02
154	GO:0042542: response to hydrogen peroxide	4.01E-02
155	GO:0009640: photomorphogenesis	4.13E-02
156	GO:0009926: auxin polar transport	4.13E-02
157	GO:0006812: cation transport	4.85E-02
158	GO:0032259: methylation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
4	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0045550: geranylgeranyl reductase activity	0.00E+00
8	GO:0010242: oxygen evolving activity	0.00E+00
9	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
10	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
11	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
12	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
13	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
14	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
15	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
16	GO:0010486: manganese:proton antiporter activity	0.00E+00
17	GO:0046408: chlorophyll synthetase activity	0.00E+00
18	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
19	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
20	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
21	GO:0031409: pigment binding	2.75E-17
22	GO:0016168: chlorophyll binding	6.01E-14
23	GO:0008266: poly(U) RNA binding	4.18E-07
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.70E-06
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.70E-06
26	GO:0046872: metal ion binding	1.30E-05
27	GO:0004332: fructose-bisphosphate aldolase activity	6.36E-05
28	GO:0016615: malate dehydrogenase activity	6.36E-05
29	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	8.84E-05
30	GO:0030060: L-malate dehydrogenase activity	8.84E-05
31	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.88E-04
32	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	1.88E-04
33	GO:0008746: NAD(P)+ transhydrogenase activity	1.88E-04
34	GO:0016041: glutamate synthase (ferredoxin) activity	1.88E-04
35	GO:0045486: naringenin 3-dioxygenase activity	1.88E-04
36	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.88E-04
37	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.88E-04
38	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.88E-04
39	GO:0071949: FAD binding	2.29E-04
40	GO:0008047: enzyme activator activity	3.21E-04
41	GO:0052832: inositol monophosphate 3-phosphatase activity	4.24E-04
42	GO:0008934: inositol monophosphate 1-phosphatase activity	4.24E-04
43	GO:0052833: inositol monophosphate 4-phosphatase activity	4.24E-04
44	GO:0019172: glyoxalase III activity	4.24E-04
45	GO:0004512: inositol-3-phosphate synthase activity	4.24E-04
46	GO:0010291: carotene beta-ring hydroxylase activity	4.24E-04
47	GO:0047746: chlorophyllase activity	4.24E-04
48	GO:0010297: heteropolysaccharide binding	4.24E-04
49	GO:0004047: aminomethyltransferase activity	4.24E-04
50	GO:0004565: beta-galactosidase activity	4.86E-04
51	GO:0005315: inorganic phosphate transmembrane transporter activity	4.86E-04
52	GO:0031072: heat shock protein binding	4.86E-04
53	GO:0004324: ferredoxin-NADP+ reductase activity	6.92E-04
54	GO:0003913: DNA photolyase activity	6.92E-04
55	GO:0030267: glyoxylate reductase (NADP) activity	6.92E-04
56	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.92E-04
57	GO:0005198: structural molecule activity	8.13E-04
58	GO:0051287: NAD binding	8.92E-04
59	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.86E-04
60	GO:0004792: thiosulfate sulfurtransferase activity	9.86E-04
61	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	9.86E-04
62	GO:0016851: magnesium chelatase activity	9.86E-04
63	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	9.86E-04
64	GO:0008508: bile acid:sodium symporter activity	9.86E-04
65	GO:0008514: organic anion transmembrane transporter activity	1.16E-03
66	GO:0047134: protein-disulfide reductase activity	1.26E-03
67	GO:0008453: alanine-glyoxylate transaminase activity	1.31E-03
68	GO:0009011: starch synthase activity	1.31E-03
69	GO:0004791: thioredoxin-disulfide reductase activity	1.57E-03
70	GO:0003959: NADPH dehydrogenase activity	1.66E-03
71	GO:0051538: 3 iron, 4 sulfur cluster binding	1.66E-03
72	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.66E-03
73	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.04E-03
74	GO:0031177: phosphopantetheine binding	2.05E-03
75	GO:0000293: ferric-chelate reductase activity	2.05E-03
76	GO:0004462: lactoylglutathione lyase activity	2.05E-03
77	GO:0042578: phosphoric ester hydrolase activity	2.05E-03
78	GO:2001070: starch binding	2.05E-03
79	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.46E-03
80	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.46E-03
81	GO:0000035: acyl binding	2.46E-03
82	GO:0009881: photoreceptor activity	2.90E-03
83	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.36E-03
84	GO:0008135: translation factor activity, RNA binding	3.84E-03
85	GO:0003746: translation elongation factor activity	4.26E-03
86	GO:0042802: identical protein binding	4.28E-03
87	GO:0005509: calcium ion binding	4.36E-03
88	GO:0050661: NADP binding	4.84E-03
89	GO:0005384: manganese ion transmembrane transporter activity	4.87E-03
90	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.87E-03
91	GO:0030234: enzyme regulator activity	5.42E-03
92	GO:0004089: carbonate dehydratase activity	7.19E-03
93	GO:0016491: oxidoreductase activity	8.11E-03
94	GO:0003712: transcription cofactor activity	8.47E-03
95	GO:0004857: enzyme inhibitor activity	9.83E-03
96	GO:0031418: L-ascorbic acid binding	9.83E-03
97	GO:0003954: NADH dehydrogenase activity	9.83E-03
98	GO:0008324: cation transmembrane transporter activity	1.05E-02
99	GO:0051082: unfolded protein binding	1.05E-02
100	GO:0015035: protein disulfide oxidoreductase activity	1.08E-02
101	GO:0003756: protein disulfide isomerase activity	1.35E-02
102	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.60E-02
103	GO:0016853: isomerase activity	1.68E-02
104	GO:0050662: coenzyme binding	1.68E-02
105	GO:0003824: catalytic activity	2.04E-02
106	GO:0008483: transaminase activity	2.22E-02
107	GO:0016413: O-acetyltransferase activity	2.31E-02
108	GO:0015250: water channel activity	2.41E-02
109	GO:0005515: protein binding	2.49E-02
110	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.81E-02
111	GO:0003993: acid phosphatase activity	3.56E-02
112	GO:0004185: serine-type carboxypeptidase activity	4.13E-02
113	GO:0015293: symporter activity	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0042579: microbody	0.00E+00
4	GO:0009534: chloroplast thylakoid	3.33E-57
5	GO:0009535: chloroplast thylakoid membrane	5.24E-50
6	GO:0009507: chloroplast	1.31E-49
7	GO:0009941: chloroplast envelope	3.31E-40
8	GO:0009579: thylakoid	6.08E-36
9	GO:0009570: chloroplast stroma	2.08E-23
10	GO:0010287: plastoglobule	1.70E-22
11	GO:0009522: photosystem I	2.79E-17
12	GO:0048046: apoplast	4.29E-14
13	GO:0030076: light-harvesting complex	4.84E-13
14	GO:0009543: chloroplast thylakoid lumen	3.62E-12
15	GO:0031977: thylakoid lumen	6.50E-11
16	GO:0009517: PSII associated light-harvesting complex II	2.51E-10
17	GO:0009523: photosystem II	2.59E-09
18	GO:0030095: chloroplast photosystem II	4.81E-09
19	GO:0009654: photosystem II oxygen evolving complex	1.73E-08
20	GO:0019898: extrinsic component of membrane	1.45E-07
21	GO:0031969: chloroplast membrane	3.35E-05
22	GO:0042651: thylakoid membrane	4.69E-05
23	GO:0016020: membrane	4.98E-05
24	GO:0009538: photosystem I reaction center	1.51E-04
25	GO:0009706: chloroplast inner membrane	2.21E-04
26	GO:0010319: stromule	2.25E-04
27	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.29E-04
28	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.24E-04
29	GO:0031304: intrinsic component of mitochondrial inner membrane	4.24E-04
30	GO:0030093: chloroplast photosystem I	4.24E-04
31	GO:0043036: starch grain	4.24E-04
32	GO:0010007: magnesium chelatase complex	6.92E-04
33	GO:0005960: glycine cleavage complex	9.86E-04
34	GO:0009544: chloroplast ATP synthase complex	1.31E-03
35	GO:0016021: integral component of membrane	1.60E-03
36	GO:0055035: plastid thylakoid membrane	1.66E-03
37	GO:0005777: peroxisome	1.85E-03
38	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.05E-03
39	GO:0009533: chloroplast stromal thylakoid	2.90E-03
40	GO:0008180: COP9 signalosome	4.35E-03
41	GO:0032040: small-subunit processome	6.58E-03
42	GO:0005578: proteinaceous extracellular matrix	7.19E-03
43	GO:0005623: cell	1.36E-02
44	GO:0005770: late endosome	1.60E-02
45	GO:0005759: mitochondrial matrix	1.66E-02
46	GO:0009707: chloroplast outer membrane	2.91E-02
47	GO:0019005: SCF ubiquitin ligase complex	2.91E-02
48	GO:0005773: vacuole	3.45E-02
49	GO:0031902: late endosome membrane	3.89E-02