gene detail

Gene description

TAIR ID: AT3G13570

Short description: SC35-like splicing factor 30A

Pathogen responsiveness: -3.04

General responsiveness: -2.61

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

mRNA splicing, via spliceosome, RNA splicing

GO cellular component

spliceosomal complex, nuclear speck, cytosol, nucleus

GO molecular function

protein binding

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 14 (Top20%)

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2 view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.64	2.15E-02