gene detail

Gene description

TAIR ID: AT3G13470

Short description: TCP-1/cpn60 chaperonin family protein

Pathogen responsiveness: 0.29

General responsiveness: 0.32

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G083716

Wheat: No orthologous gene

GO biological process

protein refolding, chaperone-mediated protein folding, mitochondrion organization, 'de novo' protein folding

GO cellular component

mitochondrion, chloroplast envelope, cytosolic ribosome, chloroplast stroma, nucleolus, chloroplast, nucleus

GO molecular function

unfolded protein binding, protein binding involved in protein folding, ATP binding

Protein domain

Pfam	PF00118, TCP-1/cpn60 chaperonin family

Metabolic pathway

PWY-2724: alkane oxidation
PWY-2501: fatty acid α-oxidation I
PWY66-21: ethanol degradation II

KEGG pathway

PATH:ath03018: RNA degradation

Transcriptional regulation

No regulation information

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

24 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	-1.54	8.07E-03
GSE17464	Penta, control	Penta, PstDC3000 12 h	-1.91	6.26E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.65	1.41E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.84	5.65E-06
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.85	7.34E-05
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a C216aA 6 h	-1.90	3.53E-04
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-1.64	2.69E-09
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-2.50	9.03E-13
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-1.96	9.36E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-2.82	5.87E-14
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.78	1.82E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.52	1.23E-06
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.64	7.72E-05
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.13	6.76E-06
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-3.32	1.78E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-2.06	5.32E-09
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.97	4.38E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.95	1.09E-11
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-1.66	1.18E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.63	1.50E-03
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.74	9.43E-04
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-1.77	3.92E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 2-4 h	3.13	2.40E-02
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	3.93	3.20E-03