co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G13470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009946: proximal/distal axis specification	0.00E+00
2	GO:0051290: protein heterotetramerization	0.00E+00
3	GO:1901671: positive regulation of superoxide dismutase activity	0.00E+00
4	GO:0016048: detection of temperature stimulus	0.00E+00
5	GO:0031508: pericentric heterochromatin assembly	0.00E+00
6	GO:0006216: cytidine catabolic process	0.00E+00
7	GO:0080094: response to trehalose-6-phosphate	0.00E+00
8	GO:0042407: cristae formation	0.00E+00
9	GO:0006342: chromatin silencing	1.59E-07
10	GO:0010424: DNA methylation on cytosine within a CG sequence	2.26E-07
11	GO:0051085: chaperone mediated protein folding requiring cofactor	2.09E-06
12	GO:0042026: protein refolding	1.50E-05
13	GO:0044030: regulation of DNA methylation	3.49E-05
14	GO:0006169: adenosine salvage	6.26E-05
15	GO:0010216: maintenance of DNA methylation	7.62E-05
16	GO:0046686: response to cadmium ion	1.44E-04
17	GO:0009662: etioplast organization	1.52E-04
18	GO:0071158: positive regulation of cell cycle arrest	1.52E-04
19	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.52E-04
20	GO:0090309: positive regulation of methylation-dependent chromatin silencing	1.52E-04
21	GO:0006423: cysteinyl-tRNA aminoacylation	1.52E-04
22	GO:0006269: DNA replication, synthesis of RNA primer	1.52E-04
23	GO:0045717: negative regulation of fatty acid biosynthetic process	1.52E-04
24	GO:0007005: mitochondrion organization	2.29E-04
25	GO:0032776: DNA methylation on cytosine	2.57E-04
26	GO:0010338: leaf formation	2.57E-04
27	GO:0035066: positive regulation of histone acetylation	2.57E-04
28	GO:0070828: heterochromatin organization	2.57E-04
29	GO:0006986: response to unfolded protein	3.73E-04
30	GO:0035067: negative regulation of histone acetylation	3.73E-04
31	GO:0045088: regulation of innate immune response	4.99E-04
32	GO:0010236: plastoquinone biosynthetic process	6.32E-04
33	GO:0044209: AMP salvage	6.32E-04
34	GO:0009972: cytidine deamination	7.73E-04
35	GO:0070814: hydrogen sulfide biosynthetic process	7.73E-04
36	GO:0006796: phosphate-containing compound metabolic process	7.73E-04
37	GO:0042793: transcription from plastid promoter	7.73E-04
38	GO:0009094: L-phenylalanine biosynthetic process	9.20E-04
39	GO:0006458: 'de novo' protein folding	9.20E-04
40	GO:0006880: intracellular sequestering of iron ion	1.07E-03
41	GO:0006826: iron ion transport	1.07E-03
42	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.13E-03
43	GO:0000105: histidine biosynthetic process	1.24E-03
44	GO:0006002: fructose 6-phosphate metabolic process	1.41E-03
45	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	1.41E-03
46	GO:0048193: Golgi vesicle transport	1.41E-03
47	GO:0006260: DNA replication	1.51E-03
48	GO:0048589: developmental growth	1.58E-03
49	GO:0008356: asymmetric cell division	1.77E-03
50	GO:0043067: regulation of programmed cell death	1.77E-03
51	GO:0006349: regulation of gene expression by genetic imprinting	1.77E-03
52	GO:0045036: protein targeting to chloroplast	1.96E-03
53	GO:0009970: cellular response to sulfate starvation	1.96E-03
54	GO:0006325: chromatin organization	1.96E-03
55	GO:0000103: sulfate assimilation	1.96E-03
56	GO:0006879: cellular iron ion homeostasis	2.17E-03
57	GO:0016569: covalent chromatin modification	2.24E-03
58	GO:0009934: regulation of meristem structural organization	2.80E-03
59	GO:0010020: chloroplast fission	2.80E-03
60	GO:0010039: response to iron ion	3.03E-03
61	GO:0009908: flower development	3.20E-03
62	GO:0009790: embryo development	3.44E-03
63	GO:0007010: cytoskeleton organization	3.49E-03
64	GO:0009944: polarity specification of adaxial/abaxial axis	3.49E-03
65	GO:0006633: fatty acid biosynthetic process	3.71E-03
66	GO:0061077: chaperone-mediated protein folding	3.98E-03
67	GO:0009411: response to UV	4.50E-03
68	GO:0009294: DNA mediated transformation	4.50E-03
69	GO:0042127: regulation of cell proliferation	4.76E-03
70	GO:0010468: regulation of gene expression	4.84E-03
71	GO:0006457: protein folding	5.04E-03
72	GO:0010197: polar nucleus fusion	5.59E-03
73	GO:0008360: regulation of cell shape	5.59E-03
74	GO:0007059: chromosome segregation	5.88E-03
75	GO:0055072: iron ion homeostasis	6.17E-03
76	GO:0009658: chloroplast organization	6.27E-03
77	GO:0000302: response to reactive oxygen species	6.46E-03
78	GO:0016032: viral process	6.76E-03
79	GO:0006310: DNA recombination	7.38E-03
80	GO:0048366: leaf development	7.38E-03
81	GO:0009615: response to virus	8.35E-03
82	GO:0009607: response to biotic stimulus	8.68E-03
83	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	8.68E-03
84	GO:0015979: photosynthesis	8.87E-03
85	GO:0042742: defense response to bacterium	8.89E-03
86	GO:0009627: systemic acquired resistance	9.01E-03
87	GO:0045892: negative regulation of transcription, DNA-templated	9.46E-03
88	GO:0016311: dephosphorylation	9.70E-03
89	GO:0008219: cell death	1.01E-02
90	GO:0048767: root hair elongation	1.04E-02
91	GO:0009910: negative regulation of flower development	1.11E-02
92	GO:0006281: DNA repair	1.15E-02
93	GO:0009965: leaf morphogenesis	1.54E-02
94	GO:0009735: response to cytokinin	1.87E-02
95	GO:0009909: regulation of flower development	1.89E-02
96	GO:0006096: glycolytic process	1.98E-02
97	GO:0051301: cell division	2.23E-02
98	GO:0006414: translational elongation	3.05E-02
99	GO:0007623: circadian rhythm	3.33E-02
100	GO:0009739: response to gibberellin	3.60E-02
101	GO:0006470: protein dephosphorylation	3.66E-02
102	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	4.30E-02
103	GO:0006970: response to osmotic stress	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0004636: phosphoribosyl-ATP diphosphatase activity	0.00E+00
2	GO:0004635: phosphoribosyl-AMP cyclohydrolase activity	0.00E+00
3	GO:0047844: deoxycytidine deaminase activity	0.00E+00
4	GO:0046982: protein heterodimerization activity	1.99E-07
5	GO:0003677: DNA binding	2.81E-06
6	GO:0051082: unfolded protein binding	1.33E-05
7	GO:0004001: adenosine kinase activity	6.26E-05
8	GO:0044183: protein binding involved in protein folding	7.62E-05
9	GO:0004312: fatty acid synthase activity	1.52E-04
10	GO:0004817: cysteine-tRNA ligase activity	1.52E-04
11	GO:0003896: DNA primase activity	1.52E-04
12	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	2.57E-04
13	GO:0004781: sulfate adenylyltransferase (ATP) activity	2.57E-04
14	GO:0010429: methyl-CpNpN binding	2.57E-04
15	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	2.57E-04
16	GO:0010428: methyl-CpNpG binding	2.57E-04
17	GO:0008199: ferric iron binding	3.73E-04
18	GO:0004322: ferroxidase activity	3.73E-04
19	GO:0047769: arogenate dehydratase activity	4.99E-04
20	GO:0004664: prephenate dehydratase activity	4.99E-04
21	GO:0010385: double-stranded methylated DNA binding	4.99E-04
22	GO:0030414: peptidase inhibitor activity	6.32E-04
23	GO:0004784: superoxide dismutase activity	7.73E-04
24	GO:0016462: pyrophosphatase activity	7.73E-04
25	GO:0003682: chromatin binding	8.93E-04
26	GO:0004126: cytidine deaminase activity	9.20E-04
27	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	9.20E-04
28	GO:0004427: inorganic diphosphatase activity	1.07E-03
29	GO:0003872: 6-phosphofructokinase activity	1.07E-03
30	GO:0005524: ATP binding	1.26E-03
31	GO:0003843: 1,3-beta-D-glucan synthase activity	1.41E-03
32	GO:0008327: methyl-CpG binding	2.17E-03
33	GO:0051087: chaperone binding	3.74E-03
34	GO:0003713: transcription coactivator activity	5.59E-03
35	GO:0005507: copper ion binding	5.68E-03
36	GO:0005200: structural constituent of cytoskeleton	7.70E-03
37	GO:0016597: amino acid binding	8.02E-03
38	GO:0042803: protein homodimerization activity	9.75E-03
39	GO:0004722: protein serine/threonine phosphatase activity	1.02E-02
40	GO:0003697: single-stranded DNA binding	1.19E-02
41	GO:0003993: acid phosphatase activity	1.23E-02
42	GO:0042393: histone binding	1.30E-02
43	GO:0004672: protein kinase activity	1.45E-02
44	GO:0005198: structural molecule activity	1.54E-02
45	GO:0005515: protein binding	1.64E-02
46	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.02E-02
47	GO:0003779: actin binding	2.21E-02
48	GO:0004386: helicase activity	2.40E-02
49	GO:0008017: microtubule binding	3.44E-02
50	GO:0016757: transferase activity, transferring glycosyl groups	4.13E-02
51	GO:0008168: methyltransferase activity	4.42E-02
52	GO:0000287: magnesium ion binding	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0000940: condensed chromosome outer kinetochore	0.00E+00
2	GO:0005721: pericentric heterochromatin	0.00E+00
3	GO:0000786: nucleosome	4.11E-10
4	GO:0009570: chloroplast stroma	6.47E-09
5	GO:0000790: nuclear chromatin	1.11E-07
6	GO:0009579: thylakoid	1.21E-05
7	GO:0042644: chloroplast nucleoid	4.35E-05
8	GO:0031436: BRCA1-BARD1 complex	6.26E-05
9	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	6.26E-05
10	GO:0009941: chloroplast envelope	7.54E-05
11	GO:0000792: heterochromatin	1.52E-04
12	GO:0005658: alpha DNA polymerase:primase complex	2.57E-04
13	GO:0070531: BRCA1-A complex	2.57E-04
14	GO:0009295: nucleoid	5.47E-04
15	GO:0022626: cytosolic ribosome	5.83E-04
16	GO:0000793: condensed chromosome	7.73E-04
17	GO:0005730: nucleolus	8.85E-04
18	GO:0010369: chromocenter	9.20E-04
19	GO:0005856: cytoskeleton	1.41E-03
20	GO:0000148: 1,3-beta-D-glucan synthase complex	1.41E-03
21	GO:0005720: nuclear heterochromatin	1.58E-03
22	GO:0005876: spindle microtubule	1.77E-03
23	GO:0009507: chloroplast	1.79E-03
24	GO:0009536: plastid	2.45E-03
25	GO:0048046: apoplast	3.36E-03
26	GO:0009532: plastid stroma	3.98E-03
27	GO:0010319: stromule	7.70E-03
28	GO:0009506: plasmodesma	1.08E-02
29	GO:0005618: cell wall	1.45E-02
30	GO:0005623: cell	2.70E-02
31	GO:0016020: membrane	2.91E-02
32	GO:0005759: mitochondrial matrix	3.11E-02
33	GO:0005622: intracellular	3.63E-02
34	GO:0005840: ribosome	4.33E-02