gene detail

Gene description

TAIR ID: AT3G03710

Short description: polyribonucleotide nucleotidyltransferase, putative

Pathogen responsiveness: -0.44

General responsiveness: 0.28

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G377761

Wheat: No orthologous gene

GO biological process

mRNA catabolic process, cellular response to phosphate starvation, carotene biosynthetic process, mRNA processing, chlorophyll biosynthetic process, tRNA processing, xanthophyll biosynthetic process, chloroplast RNA processing, RNA catabolic process, rRNA processing, negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway

GO cellular component

chloroplast stroma, chloroplast

GO molecular function

3'-5'-exoribonuclease activity, RNA binding, polyribonucleotide nucleotidyltransferase activity

Protein domain

Pfam	PF03725, 3' exoribonuclease family, domain 2
Pfam	PF01138, 3' exoribonuclease family, domain 1
Pfam	PF00575, S1 RNA binding domain
Pfam	PF00013, KH domain
SMART	SM00316, S1
SMART	SM00322, KH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00230: Purine metabolism
PATH:ath00240: Pyrimidine metabolism
PATH:ath03018: RNA degradation

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

10 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.48	2.54E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.77	7.07E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.55	1.50E-09
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.68	2.03E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.52	8.17E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.58	3.68E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.04	1.29E-11
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.73	9.53E-13
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.73	1.06E-12
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.74	3.96E-13