co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G03710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042817: pyridoxal metabolic process	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0019685: photosynthesis, dark reaction	0.00E+00
4	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0051246: regulation of protein metabolic process	0.00E+00
7	GO:0071482: cellular response to light stimulus	6.17E-09
8	GO:2001141: regulation of RNA biosynthetic process	1.19E-08
9	GO:0006352: DNA-templated transcription, initiation	3.29E-08
10	GO:0080005: photosystem stoichiometry adjustment	6.64E-07
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.94E-06
12	GO:0033014: tetrapyrrole biosynthetic process	5.94E-06
13	GO:0009902: chloroplast relocation	1.12E-05
14	GO:0009451: RNA modification	1.42E-05
15	GO:0009658: chloroplast organization	3.76E-05
16	GO:0009657: plastid organization	8.78E-05
17	GO:0009793: embryo development ending in seed dormancy	1.07E-04
18	GO:1904966: positive regulation of vitamin E biosynthetic process	1.14E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	1.14E-04
20	GO:0042371: vitamin K biosynthetic process	1.14E-04
21	GO:0071461: cellular response to redox state	1.14E-04
22	GO:0006436: tryptophanyl-tRNA aminoacylation	1.14E-04
23	GO:0006419: alanyl-tRNA aminoacylation	1.14E-04
24	GO:0010362: negative regulation of anion channel activity by blue light	1.14E-04
25	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.14E-04
26	GO:0045036: protein targeting to chloroplast	1.55E-04
27	GO:0009767: photosynthetic electron transport chain	2.41E-04
28	GO:0050688: regulation of defense response to virus	2.65E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.65E-04
30	GO:0006739: NADP metabolic process	2.65E-04
31	GO:0048255: mRNA stabilization	2.65E-04
32	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.65E-04
33	GO:0034755: iron ion transmembrane transport	2.65E-04
34	GO:0006435: threonyl-tRNA aminoacylation	2.65E-04
35	GO:0010207: photosystem II assembly	2.74E-04
36	GO:0006013: mannose metabolic process	4.38E-04
37	GO:0015979: photosynthesis	6.00E-04
38	GO:0090307: mitotic spindle assembly	6.29E-04
39	GO:0006809: nitric oxide biosynthetic process	6.29E-04
40	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	6.29E-04
41	GO:0008615: pyridoxine biosynthetic process	6.29E-04
42	GO:0071483: cellular response to blue light	8.35E-04
43	GO:0006734: NADH metabolic process	8.35E-04
44	GO:0009765: photosynthesis, light harvesting	8.35E-04
45	GO:0006221: pyrimidine nucleotide biosynthetic process	8.35E-04
46	GO:0031122: cytoplasmic microtubule organization	8.35E-04
47	GO:0010193: response to ozone	9.17E-04
48	GO:0016123: xanthophyll biosynthetic process	1.05E-03
49	GO:0009616: virus induced gene silencing	1.05E-03
50	GO:0016120: carotene biosynthetic process	1.05E-03
51	GO:0009643: photosynthetic acclimation	1.29E-03
52	GO:0042549: photosystem II stabilization	1.29E-03
53	GO:0010190: cytochrome b6f complex assembly	1.29E-03
54	GO:0015995: chlorophyll biosynthetic process	1.53E-03
55	GO:0017148: negative regulation of translation	1.54E-03
56	GO:1901259: chloroplast rRNA processing	1.54E-03
57	GO:0018298: protein-chromophore linkage	1.69E-03
58	GO:0006400: tRNA modification	1.81E-03
59	GO:0009772: photosynthetic electron transport in photosystem II	1.81E-03
60	GO:1900056: negative regulation of leaf senescence	1.81E-03
61	GO:0010050: vegetative phase change	1.81E-03
62	GO:0009735: response to cytokinin	1.83E-03
63	GO:0048564: photosystem I assembly	2.09E-03
64	GO:0042255: ribosome assembly	2.09E-03
65	GO:0006353: DNA-templated transcription, termination	2.09E-03
66	GO:0009637: response to blue light	2.13E-03
67	GO:0032544: plastid translation	2.39E-03
68	GO:0006783: heme biosynthetic process	2.70E-03
69	GO:0000373: Group II intron splicing	2.70E-03
70	GO:0010114: response to red light	2.74E-03
71	GO:0006810: transport	2.85E-03
72	GO:0009638: phototropism	3.02E-03
73	GO:0006779: porphyrin-containing compound biosynthetic process	3.02E-03
74	GO:0010380: regulation of chlorophyll biosynthetic process	3.02E-03
75	GO:0010267: production of ta-siRNAs involved in RNA interference	3.02E-03
76	GO:0006457: protein folding	3.10E-03
77	GO:0006259: DNA metabolic process	3.36E-03
78	GO:0006782: protoporphyrinogen IX biosynthetic process	3.36E-03
79	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.36E-03
80	GO:0006879: cellular iron ion homeostasis	3.71E-03
81	GO:0009773: photosynthetic electron transport in photosystem I	3.71E-03
82	GO:0006265: DNA topological change	3.71E-03
83	GO:0055114: oxidation-reduction process	4.59E-03
84	GO:0090351: seedling development	5.21E-03
85	GO:0010025: wax biosynthetic process	5.61E-03
86	GO:0006418: tRNA aminoacylation for protein translation	6.45E-03
87	GO:0007017: microtubule-based process	6.45E-03
88	GO:0006306: DNA methylation	6.89E-03
89	GO:0080092: regulation of pollen tube growth	7.34E-03
90	GO:0016226: iron-sulfur cluster assembly	7.34E-03
91	GO:0016117: carotenoid biosynthetic process	8.74E-03
92	GO:0008033: tRNA processing	9.23E-03
93	GO:0000413: protein peptidyl-prolyl isomerization	9.23E-03
94	GO:0010118: stomatal movement	9.23E-03
95	GO:0048868: pollen tube development	9.73E-03
96	GO:0015986: ATP synthesis coupled proton transport	1.02E-02
97	GO:0007059: chromosome segregation	1.02E-02
98	GO:0009791: post-embryonic development	1.08E-02
99	GO:0032502: developmental process	1.18E-02
100	GO:0016032: viral process	1.18E-02
101	GO:0046686: response to cadmium ion	1.19E-02
102	GO:0051607: defense response to virus	1.40E-02
103	GO:0010027: thylakoid membrane organization	1.46E-02
104	GO:0009816: defense response to bacterium, incompatible interaction	1.52E-02
105	GO:0042128: nitrate assimilation	1.58E-02
106	GO:0009817: defense response to fungus, incompatible interaction	1.77E-02
107	GO:0048481: plant ovule development	1.77E-02
108	GO:0000160: phosphorelay signal transduction system	1.83E-02
109	GO:0046777: protein autophosphorylation	1.86E-02
110	GO:0007568: aging	1.96E-02
111	GO:0009910: negative regulation of flower development	1.96E-02
112	GO:0006364: rRNA processing	3.09E-02
113	GO:0010224: response to UV-B	3.17E-02
114	GO:0006417: regulation of translation	3.33E-02
115	GO:0009409: response to cold	3.58E-02
116	GO:0009553: embryo sac development	3.89E-02
117	GO:0006396: RNA processing	4.06E-02
118	GO:0009416: response to light stimulus	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0001053: plastid sigma factor activity	4.96E-11
5	GO:0016987: sigma factor activity	4.96E-11
6	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.12E-05
7	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.25E-05
8	GO:0010181: FMN binding	4.55E-05
9	GO:0048038: quinone binding	5.65E-05
10	GO:0052857: NADPHX epimerase activity	1.14E-04
11	GO:0004830: tryptophan-tRNA ligase activity	1.14E-04
12	GO:0030941: chloroplast targeting sequence binding	1.14E-04
13	GO:0004733: pyridoxamine-phosphate oxidase activity	1.14E-04
14	GO:0004813: alanine-tRNA ligase activity	1.14E-04
15	GO:0004325: ferrochelatase activity	1.14E-04
16	GO:0052856: NADHX epimerase activity	1.14E-04
17	GO:0004519: endonuclease activity	1.65E-04
18	GO:0004109: coproporphyrinogen oxidase activity	2.65E-04
19	GO:0004829: threonine-tRNA ligase activity	2.65E-04
20	GO:0032947: protein complex scaffold	4.38E-04
21	GO:0004148: dihydrolipoyl dehydrogenase activity	4.38E-04
22	GO:0003727: single-stranded RNA binding	5.99E-04
23	GO:0009882: blue light photoreceptor activity	6.29E-04
24	GO:0043023: ribosomal large subunit binding	6.29E-04
25	GO:0009041: uridylate kinase activity	6.29E-04
26	GO:0016851: magnesium chelatase activity	6.29E-04
27	GO:0003723: RNA binding	7.77E-04
28	GO:0051861: glycolipid binding	8.35E-04
29	GO:0043015: gamma-tubulin binding	8.35E-04
30	GO:0043495: protein anchor	8.35E-04
31	GO:0019843: rRNA binding	8.76E-04
32	GO:0051011: microtubule minus-end binding	1.05E-03
33	GO:0004559: alpha-mannosidase activity	1.54E-03
34	GO:0015631: tubulin binding	1.54E-03
35	GO:0019899: enzyme binding	1.81E-03
36	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.39E-03
37	GO:0051537: 2 iron, 2 sulfur cluster binding	2.96E-03
38	GO:0005381: iron ion transmembrane transporter activity	3.02E-03
39	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.71E-03
40	GO:0000049: tRNA binding	4.06E-03
41	GO:0000155: phosphorelay sensor kinase activity	4.43E-03
42	GO:0051536: iron-sulfur cluster binding	6.03E-03
43	GO:0043424: protein histidine kinase binding	6.45E-03
44	GO:0022891: substrate-specific transmembrane transporter activity	7.79E-03
45	GO:0004812: aminoacyl-tRNA ligase activity	8.74E-03
46	GO:0016491: oxidoreductase activity	9.27E-03
47	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.73E-03
48	GO:0008080: N-acetyltransferase activity	9.73E-03
49	GO:0042802: identical protein binding	1.15E-02
50	GO:0005200: structural constituent of cytoskeleton	1.35E-02
51	GO:0016597: amino acid binding	1.40E-02
52	GO:0016168: chlorophyll binding	1.52E-02
53	GO:0050897: cobalt ion binding	1.96E-02
54	GO:0005506: iron ion binding	2.41E-02
55	GO:0003924: GTPase activity	2.56E-02
56	GO:0043621: protein self-association	2.65E-02
57	GO:0005198: structural molecule activity	2.72E-02
58	GO:0009055: electron carrier activity	2.75E-02
59	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.79E-02
60	GO:0003690: double-stranded DNA binding	3.17E-02
61	GO:0003777: microtubule motor activity	3.33E-02
62	GO:0051082: unfolded protein binding	3.98E-02
63	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.73E-32
2	GO:0009535: chloroplast thylakoid membrane	3.86E-14
3	GO:0009570: chloroplast stroma	1.34E-08
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.50E-06
5	GO:0042646: plastid nucleoid	5.94E-06
6	GO:0009941: chloroplast envelope	7.36E-06
7	GO:0009534: chloroplast thylakoid	1.22E-05
8	GO:0009579: thylakoid	9.99E-05
9	GO:0008274: gamma-tubulin ring complex	2.65E-04
10	GO:0042651: thylakoid membrane	4.22E-04
11	GO:0010007: magnesium chelatase complex	4.38E-04
12	GO:0000923: equatorial microtubule organizing center	6.29E-04
13	GO:0030286: dynein complex	8.35E-04
14	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	8.35E-04
15	GO:0009523: photosystem II	8.60E-04
16	GO:0009543: chloroplast thylakoid lumen	8.76E-04
17	GO:0055035: plastid thylakoid membrane	1.05E-03
18	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.29E-03
19	GO:0016363: nuclear matrix	1.54E-03
20	GO:0005655: nucleolar ribonuclease P complex	1.54E-03
21	GO:0009707: chloroplast outer membrane	1.69E-03
22	GO:0031359: integral component of chloroplast outer membrane	1.81E-03
23	GO:0009533: chloroplast stromal thylakoid	1.81E-03
24	GO:0009539: photosystem II reaction center	2.39E-03
25	GO:0031977: thylakoid lumen	2.52E-03
26	GO:0042644: chloroplast nucleoid	2.70E-03
27	GO:0000922: spindle pole	2.70E-03
28	GO:0031969: chloroplast membrane	2.96E-03
29	GO:0016324: apical plasma membrane	3.36E-03
30	GO:0048471: perinuclear region of cytoplasm	3.71E-03
31	GO:0030095: chloroplast photosystem II	4.81E-03
32	GO:0043231: intracellular membrane-bounded organelle	5.49E-03
33	GO:0005875: microtubule associated complex	5.61E-03
34	GO:0009654: photosystem II oxygen evolving complex	6.45E-03
35	GO:0005623: cell	6.70E-03
36	GO:0009532: plastid stroma	6.89E-03
37	GO:0010319: stromule	1.35E-02
38	GO:0009295: nucleoid	1.35E-02
39	GO:0009536: plastid	3.16E-02
40	GO:0005747: mitochondrial respiratory chain complex I	3.57E-02
41	GO:0009706: chloroplast inner membrane	3.98E-02
42	GO:0010287: plastoglobule	4.49E-02