gene detail

Gene description

TAIR ID: AT3G02360

Short description: 6-phosphogluconate dehydrogenase family protein

Pathogen responsiveness: -0.39

General responsiveness: -0.78

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G145715

Wheat: No orthologous gene

GO biological process

response to salt stress, male-female gamete recognition during double fertilization forming a zygote and endosperm, D-gluconate metabolic process, oxidation-reduction process, pentose-phosphate shunt

GO cellular component

peroxisome, P4 peroxisome, cytoplasm, chloroplast stroma, cytosol

GO molecular function

phosphogluconate dehydrogenase (decarboxylating) activity

Protein domain

Pfam	PF03446, NAD binding domain of 6-phosphogluconate dehydrogenase
Pfam	PF00393, 6-phosphogluconate dehydrogenase, C-terminal domain
SMART	SM01350, 6PGD

Metabolic pathway

OXIDATIVEPENT-PWY: pentose phosphate pathway (oxidative branch)
PENTOSE-P-PWY: pentose phosphate pathway

KEGG pathway

PATH:ath01200: Carbon metabolism
PATH:ath00030: Pentose phosphate pathway
PATH:ath00480: Glutathione metabolism

Transcriptional regulation

Regulator:
AT2G47190

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

14 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	1.79	4.10E-07
GSE17464	Laer, control	Laer, Flg22 2 h	1.89	4.36E-07
GSE17464	Penta, control	Penta, Flg22 2 h	1.72	8.74E-07
GSE17464	Penta, control	Penta, Flg22 2 h	1.95	3.50E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.61	1.35E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.20	1.70E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.07	5.24E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.03	4.55E-13
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.98	7.53E-14
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.72	2.55E-09
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.62	1.08E-08
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	1.61	7.06E-09
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	1.55	9.13E-10
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.64	9.73E-03