co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010324: membrane invagination	0.00E+00
2	GO:0010055: atrichoblast differentiation	0.00E+00
3	GO:1902001: fatty acid transmembrane transport	0.00E+00
4	GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	0.00E+00
5	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
6	GO:0097237: cellular response to toxic substance	0.00E+00
7	GO:0015690: aluminum cation transport	0.00E+00
8	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
9	GO:0002376: immune system process	0.00E+00
10	GO:0006952: defense response	1.13E-05
11	GO:0010112: regulation of systemic acquired resistance	1.22E-05
12	GO:0006979: response to oxidative stress	1.36E-05
13	GO:1903507: negative regulation of nucleic acid-templated transcription	2.77E-05
14	GO:0009611: response to wounding	4.46E-05
15	GO:0009643: photosynthetic acclimation	1.13E-04
16	GO:0071456: cellular response to hypoxia	1.34E-04
17	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.34E-04
18	GO:0042391: regulation of membrane potential	2.15E-04
19	GO:0031347: regulation of defense response	2.40E-04
20	GO:0030091: protein repair	2.58E-04
21	GO:1990542: mitochondrial transmembrane transport	2.70E-04
22	GO:0090421: embryonic meristem initiation	2.70E-04
23	GO:0032107: regulation of response to nutrient levels	2.70E-04
24	GO:0048508: embryonic meristem development	2.70E-04
25	GO:0015760: glucose-6-phosphate transport	2.70E-04
26	GO:0033306: phytol metabolic process	2.70E-04
27	GO:0009700: indole phytoalexin biosynthetic process	2.70E-04
28	GO:0034214: protein hexamerization	2.70E-04
29	GO:0010120: camalexin biosynthetic process	3.19E-04
30	GO:0009753: response to jasmonic acid	3.42E-04
31	GO:0019725: cellular homeostasis	5.94E-04
32	GO:0071668: plant-type cell wall assembly	5.94E-04
33	GO:0019441: tryptophan catabolic process to kynurenine	5.94E-04
34	GO:0015914: phospholipid transport	5.94E-04
35	GO:0009838: abscission	5.94E-04
36	GO:0080181: lateral root branching	5.94E-04
37	GO:0055088: lipid homeostasis	5.94E-04
38	GO:0015908: fatty acid transport	5.94E-04
39	GO:0044419: interspecies interaction between organisms	5.94E-04
40	GO:0009945: radial axis specification	5.94E-04
41	GO:0015712: hexose phosphate transport	5.94E-04
42	GO:0051258: protein polymerization	5.94E-04
43	GO:0080167: response to karrikin	6.69E-04
44	GO:0010311: lateral root formation	7.68E-04
45	GO:0035436: triose phosphate transmembrane transport	9.62E-04
46	GO:0010186: positive regulation of cellular defense response	9.62E-04
47	GO:0010366: negative regulation of ethylene biosynthetic process	9.62E-04
48	GO:0015695: organic cation transport	9.62E-04
49	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	9.62E-04
50	GO:0015714: phosphoenolpyruvate transport	9.62E-04
51	GO:1900055: regulation of leaf senescence	9.62E-04
52	GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	9.62E-04
53	GO:0006954: inflammatory response	9.62E-04
54	GO:2000377: regulation of reactive oxygen species metabolic process	1.23E-03
55	GO:0080147: root hair cell development	1.23E-03
56	GO:0051707: response to other organism	1.33E-03
57	GO:0051289: protein homotetramerization	1.38E-03
58	GO:0001676: long-chain fatty acid metabolic process	1.38E-03
59	GO:0006020: inositol metabolic process	1.38E-03
60	GO:0015696: ammonium transport	1.38E-03
61	GO:0007166: cell surface receptor signaling pathway	1.41E-03
62	GO:0009617: response to bacterium	1.50E-03
63	GO:0050832: defense response to fungus	1.59E-03
64	GO:0009625: response to insect	1.76E-03
65	GO:1901141: regulation of lignin biosynthetic process	1.84E-03
66	GO:0010109: regulation of photosynthesis	1.84E-03
67	GO:0060548: negative regulation of cell death	1.84E-03
68	GO:0048638: regulation of developmental growth	1.84E-03
69	GO:0072488: ammonium transmembrane transport	1.84E-03
70	GO:0006621: protein retention in ER lumen	1.84E-03
71	GO:0015713: phosphoglycerate transport	1.84E-03
72	GO:0031365: N-terminal protein amino acid modification	2.35E-03
73	GO:0016094: polyprenol biosynthetic process	2.35E-03
74	GO:0034052: positive regulation of plant-type hypersensitive response	2.35E-03
75	GO:0009164: nucleoside catabolic process	2.35E-03
76	GO:0000304: response to singlet oxygen	2.35E-03
77	GO:0009117: nucleotide metabolic process	2.90E-03
78	GO:0009759: indole glucosinolate biosynthetic process	2.90E-03
79	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.90E-03
80	GO:0010200: response to chitin	3.26E-03
81	GO:0009942: longitudinal axis specification	3.49E-03
82	GO:0009094: L-phenylalanine biosynthetic process	3.49E-03
83	GO:0042372: phylloquinone biosynthetic process	3.49E-03
84	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.12E-03
85	GO:0071446: cellular response to salicylic acid stimulus	4.12E-03
86	GO:1900056: negative regulation of leaf senescence	4.12E-03
87	GO:0050829: defense response to Gram-negative bacterium	4.12E-03
88	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	4.12E-03
89	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.77E-03
90	GO:0009819: drought recovery	4.77E-03
91	GO:0043068: positive regulation of programmed cell death	4.77E-03
92	GO:0006950: response to stress	5.06E-03
93	GO:0006997: nucleus organization	5.47E-03
94	GO:0010204: defense response signaling pathway, resistance gene-independent	5.47E-03
95	GO:0030968: endoplasmic reticulum unfolded protein response	5.47E-03
96	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.47E-03
97	GO:0010208: pollen wall assembly	5.47E-03
98	GO:0009699: phenylpropanoid biosynthetic process	5.47E-03
99	GO:0009880: embryonic pattern specification	5.47E-03
100	GO:0009407: toxin catabolic process	6.19E-03
101	GO:0001708: cell fate specification	6.20E-03
102	GO:0009835: fruit ripening	6.20E-03
103	GO:0019432: triglyceride biosynthetic process	6.20E-03
104	GO:0007568: aging	6.49E-03
105	GO:0048527: lateral root development	6.49E-03
106	GO:0009638: phototropism	6.96E-03
107	GO:0090332: stomatal closure	6.96E-03
108	GO:0048268: clathrin coat assembly	6.96E-03
109	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	6.96E-03
110	GO:0006468: protein phosphorylation	7.70E-03
111	GO:0006032: chitin catabolic process	7.75E-03
112	GO:0043069: negative regulation of programmed cell death	7.75E-03
113	GO:0019538: protein metabolic process	7.75E-03
114	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.75E-03
115	GO:0006897: endocytosis	8.46E-03
116	GO:0048229: gametophyte development	8.58E-03
117	GO:0009682: induced systemic resistance	8.58E-03
118	GO:0072593: reactive oxygen species metabolic process	8.58E-03
119	GO:0002213: defense response to insect	9.44E-03
120	GO:0009636: response to toxic substance	1.03E-02
121	GO:0009785: blue light signaling pathway	1.03E-02
122	GO:0055114: oxidation-reduction process	1.13E-02
123	GO:0042343: indole glucosinolate metabolic process	1.22E-02
124	GO:0042742: defense response to bacterium	1.24E-02
125	GO:0043622: cortical microtubule organization	1.52E-02
126	GO:0009695: jasmonic acid biosynthetic process	1.52E-02
127	GO:0044550: secondary metabolite biosynthetic process	1.55E-02
128	GO:0009626: plant-type hypersensitive response	1.57E-02
129	GO:0007165: signal transduction	1.59E-02
130	GO:0016998: cell wall macromolecule catabolic process	1.62E-02
131	GO:0009620: response to fungus	1.62E-02
132	GO:0098542: defense response to other organism	1.62E-02
133	GO:0015979: photosynthesis	1.65E-02
134	GO:0006012: galactose metabolic process	1.84E-02
135	GO:0009693: ethylene biosynthetic process	1.84E-02
136	GO:0070417: cellular response to cold	2.07E-02
137	GO:0016310: phosphorylation	2.17E-02
138	GO:0000271: polysaccharide biosynthetic process	2.19E-02
139	GO:0000413: protein peptidyl-prolyl isomerization	2.19E-02
140	GO:0042631: cellular response to water deprivation	2.19E-02
141	GO:0009751: response to salicylic acid	2.24E-02
142	GO:0048868: pollen tube development	2.31E-02
143	GO:0045489: pectin biosynthetic process	2.31E-02
144	GO:0071472: cellular response to salt stress	2.31E-02
145	GO:0006885: regulation of pH	2.31E-02
146	GO:0006520: cellular amino acid metabolic process	2.31E-02
147	GO:0009646: response to absence of light	2.43E-02
148	GO:0006623: protein targeting to vacuole	2.55E-02
149	GO:0009749: response to glucose	2.55E-02
150	GO:0006635: fatty acid beta-oxidation	2.68E-02
151	GO:0010193: response to ozone	2.68E-02
152	GO:0009630: gravitropism	2.81E-02
153	GO:0019761: glucosinolate biosynthetic process	2.81E-02
154	GO:0010150: leaf senescence	3.06E-02
155	GO:0006904: vesicle docking involved in exocytosis	3.21E-02
156	GO:0009615: response to virus	3.48E-02
157	GO:0009627: systemic acquired resistance	3.77E-02
158	GO:0009813: flavonoid biosynthetic process	4.36E-02
159	GO:0009737: response to abscisic acid	4.41E-02
160	GO:0009555: pollen development	4.64E-02
161	GO:0009631: cold acclimation	4.66E-02
162	GO:0016051: carbohydrate biosynthetic process	4.97E-02
163	GO:0009853: photorespiration	4.97E-02
164	GO:0009867: jasmonic acid mediated signaling pathway	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
2	GO:0030552: cAMP binding	6.27E-05
3	GO:0030553: cGMP binding	6.27E-05
4	GO:0003714: transcription corepressor activity	8.75E-05
5	GO:0016301: kinase activity	9.83E-05
6	GO:0005216: ion channel activity	1.02E-04
7	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.56E-04
8	GO:0005249: voltage-gated potassium channel activity	2.15E-04
9	GO:0030551: cyclic nucleotide binding	2.15E-04
10	GO:0047940: glucuronokinase activity	2.70E-04
11	GO:2001147: camalexin binding	2.70E-04
12	GO:0015245: fatty acid transporter activity	2.70E-04
13	GO:0090353: polygalacturonase inhibitor activity	2.70E-04
14	GO:2001227: quercitrin binding	2.70E-04
15	GO:0019707: protein-cysteine S-acyltransferase activity	2.70E-04
16	GO:0004385: guanylate kinase activity	5.94E-04
17	GO:0047364: desulfoglucosinolate sulfotransferase activity	5.94E-04
18	GO:0015152: glucose-6-phosphate transmembrane transporter activity	5.94E-04
19	GO:0004061: arylformamidase activity	5.94E-04
20	GO:0004674: protein serine/threonine kinase activity	8.66E-04
21	GO:0032403: protein complex binding	9.62E-04
22	GO:0071917: triose-phosphate transmembrane transporter activity	9.62E-04
23	GO:0004324: ferredoxin-NADP+ reductase activity	9.62E-04
24	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	9.62E-04
25	GO:0017077: oxidative phosphorylation uncoupler activity	1.38E-03
26	GO:0009916: alternative oxidase activity	1.84E-03
27	GO:0015120: phosphoglycerate transmembrane transporter activity	1.84E-03
28	GO:0047769: arogenate dehydratase activity	1.84E-03
29	GO:0004737: pyruvate decarboxylase activity	1.84E-03
30	GO:0004664: prephenate dehydratase activity	1.84E-03
31	GO:0046923: ER retention sequence binding	1.84E-03
32	GO:0003995: acyl-CoA dehydrogenase activity	1.84E-03
33	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.92E-03
34	GO:0005524: ATP binding	2.07E-03
35	GO:0003997: acyl-CoA oxidase activity	2.35E-03
36	GO:0005496: steroid binding	2.35E-03
37	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.35E-03
38	GO:0002094: polyprenyltransferase activity	2.35E-03
39	GO:0008519: ammonium transmembrane transporter activity	2.90E-03
40	GO:0030976: thiamine pyrophosphate binding	2.90E-03
41	GO:0004497: monooxygenase activity	3.10E-03
42	GO:0004144: diacylglycerol O-acyltransferase activity	3.49E-03
43	GO:0004656: procollagen-proline 4-dioxygenase activity	3.49E-03
44	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.49E-03
45	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	3.49E-03
46	GO:0003950: NAD+ ADP-ribosyltransferase activity	3.49E-03
47	GO:0005261: cation channel activity	3.49E-03
48	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.83E-03
49	GO:0043295: glutathione binding	4.12E-03
50	GO:0016831: carboxy-lyase activity	4.12E-03
51	GO:0008235: metalloexopeptidase activity	4.12E-03
52	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.59E-03
53	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.77E-03
54	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.77E-03
55	GO:0004034: aldose 1-epimerase activity	4.77E-03
56	GO:0005544: calcium-dependent phospholipid binding	4.77E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	4.77E-03
58	GO:0030247: polysaccharide binding	5.06E-03
59	GO:0016207: 4-coumarate-CoA ligase activity	6.20E-03
60	GO:0071949: FAD binding	6.20E-03
61	GO:0047617: acyl-CoA hydrolase activity	6.96E-03
62	GO:0005516: calmodulin binding	7.40E-03
63	GO:0004568: chitinase activity	7.75E-03
64	GO:0008171: O-methyltransferase activity	7.75E-03
65	GO:0005545: 1-phosphatidylinositol binding	7.75E-03
66	GO:0050661: NADP binding	8.11E-03
67	GO:0004177: aminopeptidase activity	8.58E-03
68	GO:0004364: glutathione transferase activity	8.81E-03
69	GO:0005315: inorganic phosphate transmembrane transporter activity	1.03E-02
70	GO:0008266: poly(U) RNA binding	1.12E-02
71	GO:0008146: sulfotransferase activity	1.22E-02
72	GO:0050660: flavin adenine dinucleotide binding	1.28E-02
73	GO:0001046: core promoter sequence-specific DNA binding	1.42E-02
74	GO:0043565: sequence-specific DNA binding	1.57E-02
75	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.62E-02
76	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.73E-02
77	GO:0042803: protein homodimerization activity	1.86E-02
78	GO:0030246: carbohydrate binding	2.09E-02
79	GO:0005451: monovalent cation:proton antiporter activity	2.19E-02
80	GO:0019825: oxygen binding	2.27E-02
81	GO:0005507: copper ion binding	2.27E-02
82	GO:0005199: structural constituent of cell wall	2.31E-02
83	GO:0030276: clathrin binding	2.31E-02
84	GO:0004672: protein kinase activity	2.39E-02
85	GO:0016853: isomerase activity	2.43E-02
86	GO:0015299: solute:proton antiporter activity	2.43E-02
87	GO:0030170: pyridoxal phosphate binding	2.46E-02
88	GO:0004872: receptor activity	2.55E-02
89	GO:0004197: cysteine-type endopeptidase activity	2.81E-02
90	GO:0015385: sodium:proton antiporter activity	2.94E-02
91	GO:0016791: phosphatase activity	3.07E-02
92	GO:0008483: transaminase activity	3.21E-02
93	GO:0016597: amino acid binding	3.34E-02
94	GO:0005509: calcium ion binding	3.38E-02
95	GO:0051213: dioxygenase activity	3.48E-02
96	GO:0005506: iron ion binding	3.72E-02
97	GO:0042802: identical protein binding	3.88E-02
98	GO:0004806: triglyceride lipase activity	3.91E-02
99	GO:0004721: phosphoprotein phosphatase activity	3.91E-02
100	GO:0030145: manganese ion binding	4.66E-02
101	GO:0050897: cobalt ion binding	4.66E-02
102	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	4.75E-05
2	GO:0016021: integral component of membrane	1.48E-04
3	GO:0000138: Golgi trans cisterna	2.70E-04
4	GO:0005901: caveola	5.94E-04
5	GO:0009530: primary cell wall	9.62E-04
6	GO:0070062: extracellular exosome	1.38E-03
7	GO:0000813: ESCRT I complex	2.35E-03
8	GO:0016363: nuclear matrix	3.49E-03
9	GO:0005794: Golgi apparatus	8.13E-03
10	GO:0005802: trans-Golgi network	8.25E-03
11	GO:0005887: integral component of plasma membrane	8.93E-03
12	GO:0005769: early endosome	1.32E-02
13	GO:0070469: respiratory chain	1.52E-02
14	GO:0005905: clathrin-coated pit	1.62E-02
15	GO:0005777: peroxisome	1.65E-02
16	GO:0030136: clathrin-coated vesicle	2.07E-02
17	GO:0005770: late endosome	2.31E-02
18	GO:0009504: cell plate	2.55E-02
19	GO:0031965: nuclear membrane	2.55E-02
20	GO:0000145: exocyst	2.81E-02
21	GO:0009506: plasmodesma	3.09E-02
22	GO:0005768: endosome	3.26E-02