gene detail

Gene description

TAIR ID: AT3G01540

Short description: DEAD box RNA helicase 1

Pathogen responsiveness: -0.79

General responsiveness: -2.02

Orthologous

Rice:

Maize:

Wheat: No orthologous gene

GO biological process

RNA secondary structure unwinding, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, rRNA processing

GO cellular component

nucleolus, nucleus, cytoplasm

GO molecular function

ATP binding, ATP-dependent RNA helicase activity, RNA binding, ATPase activity

Protein domain

Pfam	PF00270, DEAD/DEAH box helicase
Pfam	PF00397, WW domain
Pfam	PF00271, Helicase conserved C-terminal domain
SMART	SM00456, WW
SMART	SM00490, HELICc
SMART	SM00487, DEXDc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT5G56110

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

Coexpression network

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.65	1.42E-02
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.51	1.01E-05
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.78	3.01E-08
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.53	2.26E-22
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	2.23	1.60E-18
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.90	6.24E-15
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	2.28	1.91E-19
GSE56094	Col, WT, control 5 h	Col, WT, PstDC3000 5 h	1.78	9.18E-12
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	1.96	2.17E-14
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.71	7.16E-12
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	2.35	1.29E-19
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	1.95	5.55E-15
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.95	7.26E-08