Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G01540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904526: regulation of microtubule binding0.00E+00
2GO:0007141: male meiosis I0.00E+00
3GO:0009737: response to abscisic acid9.87E-06
4GO:0010200: response to chitin1.49E-05
5GO:2000070: regulation of response to water deprivation3.30E-05
6GO:2000280: regulation of root development6.42E-05
7GO:0051180: vitamin transport7.07E-05
8GO:0030974: thiamine pyrophosphate transport7.07E-05
9GO:0034620: cellular response to unfolded protein7.07E-05
10GO:1902039: negative regulation of seed dormancy process7.07E-05
11GO:0034472: snRNA 3'-end processing7.07E-05
12GO:0009609: response to symbiotic bacterium7.07E-05
13GO:0009611: response to wounding1.26E-04
14GO:0006970: response to osmotic stress1.36E-04
15GO:0015893: drug transport1.70E-04
16GO:0048838: release of seed from dormancy1.70E-04
17GO:0031407: oxylipin metabolic process1.70E-04
18GO:0010289: homogalacturonan biosynthetic process1.70E-04
19GO:0080168: abscisic acid transport2.86E-04
20GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid2.86E-04
21GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.86E-04
22GO:0046168: glycerol-3-phosphate catabolic process2.86E-04
23GO:0006473: protein acetylation2.86E-04
24GO:0033014: tetrapyrrole biosynthetic process4.15E-04
25GO:0009413: response to flooding4.15E-04
26GO:0006072: glycerol-3-phosphate metabolic process4.15E-04
27GO:0009790: embryo development4.79E-04
28GO:0009939: positive regulation of gibberellic acid mediated signaling pathway5.53E-04
29GO:0006536: glutamate metabolic process5.53E-04
30GO:0006552: leucine catabolic process5.53E-04
31GO:0010286: heat acclimation6.38E-04
32GO:0006470: protein dephosphorylation6.99E-04
33GO:0009247: glycolipid biosynthetic process7.00E-04
34GO:0009788: negative regulation of abscisic acid-activated signaling pathway7.52E-04
35GO:0047484: regulation of response to osmotic stress8.57E-04
36GO:0006574: valine catabolic process8.57E-04
37GO:0048232: male gamete generation8.57E-04
38GO:0045926: negative regulation of growth1.02E-03
39GO:0009082: branched-chain amino acid biosynthetic process1.02E-03
40GO:0010555: response to mannitol1.02E-03
41GO:1901001: negative regulation of response to salt stress1.02E-03
42GO:1902074: response to salt1.19E-03
43GO:0006401: RNA catabolic process1.19E-03
44GO:0006955: immune response1.19E-03
45GO:0019375: galactolipid biosynthetic process1.37E-03
46GO:0009415: response to water1.37E-03
47GO:0007155: cell adhesion1.37E-03
48GO:0051865: protein autoubiquitination1.76E-03
49GO:0006783: heme biosynthetic process1.76E-03
50GO:0010345: suberin biosynthetic process1.76E-03
51GO:0016573: histone acetylation1.97E-03
52GO:0006779: porphyrin-containing compound biosynthetic process1.97E-03
53GO:0009751: response to salicylic acid2.12E-03
54GO:0055062: phosphate ion homeostasis2.19E-03
55GO:0006782: protoporphyrinogen IX biosynthetic process2.19E-03
56GO:0051026: chiasma assembly2.19E-03
57GO:0009414: response to water deprivation2.22E-03
58GO:0006355: regulation of transcription, DNA-templated2.31E-03
59GO:0010015: root morphogenesis2.41E-03
60GO:0006820: anion transport2.64E-03
61GO:0009873: ethylene-activated signaling pathway2.98E-03
62GO:0048467: gynoecium development3.12E-03
63GO:0034605: cellular response to heat3.12E-03
64GO:0010030: positive regulation of seed germination3.37E-03
65GO:0009738: abscisic acid-activated signaling pathway4.27E-03
66GO:0006633: fatty acid biosynthetic process4.34E-03
67GO:0031408: oxylipin biosynthetic process4.44E-03
68GO:0010431: seed maturation4.44E-03
69GO:0009269: response to desiccation4.44E-03
70GO:0007131: reciprocal meiotic recombination4.73E-03
71GO:0030433: ubiquitin-dependent ERAD pathway4.73E-03
72GO:0071456: cellular response to hypoxia4.73E-03
73GO:0007623: circadian rhythm4.76E-03
74GO:0010150: leaf senescence4.76E-03
75GO:0000271: polysaccharide biosynthetic process5.93E-03
76GO:0045489: pectin biosynthetic process6.24E-03
77GO:0006814: sodium ion transport6.56E-03
78GO:0009749: response to glucose6.89E-03
79GO:0000302: response to reactive oxygen species7.22E-03
80GO:0080156: mitochondrial mRNA modification7.22E-03
81GO:0048510: regulation of timing of transition from vegetative to reproductive phase7.22E-03
82GO:0006310: DNA recombination8.25E-03
83GO:0071805: potassium ion transmembrane transport8.61E-03
84GO:0051607: defense response to virus8.97E-03
85GO:0006351: transcription, DNA-templated9.09E-03
86GO:0001666: response to hypoxia9.34E-03
87GO:0010027: thylakoid membrane organization9.34E-03
88GO:0009816: defense response to bacterium, incompatible interaction9.71E-03
89GO:0010029: regulation of seed germination9.71E-03
90GO:0015995: chlorophyll biosynthetic process1.05E-02
91GO:0048481: plant ovule development1.13E-02
92GO:0009631: cold acclimation1.25E-02
93GO:0045087: innate immune response1.33E-02
94GO:0016051: carbohydrate biosynthetic process1.33E-02
95GO:0009651: response to salt stress1.44E-02
96GO:0009753: response to jasmonic acid1.45E-02
97GO:0006839: mitochondrial transport1.46E-02
98GO:0042542: response to hydrogen peroxide1.55E-02
99GO:0010114: response to red light1.59E-02
100GO:0051707: response to other organism1.59E-02
101GO:0009409: response to cold1.60E-02
102GO:0000209: protein polyubiquitination1.64E-02
103GO:0009644: response to high light intensity1.68E-02
104GO:0006855: drug transmembrane transport1.77E-02
105GO:0006260: DNA replication1.82E-02
106GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.82E-02
107GO:0005975: carbohydrate metabolic process1.85E-02
108GO:0006812: cation transport1.87E-02
109GO:0042538: hyperosmotic salinity response1.87E-02
110GO:0006813: potassium ion transport1.97E-02
111GO:0009809: lignin biosynthetic process1.97E-02
112GO:0006364: rRNA processing1.97E-02
113GO:0048367: shoot system development2.26E-02
114GO:0009555: pollen development2.40E-02
115GO:0009742: brassinosteroid mediated signaling pathway2.63E-02
116GO:0045893: positive regulation of transcription, DNA-templated2.76E-02
117GO:0000398: mRNA splicing, via spliceosome2.80E-02
118GO:0009739: response to gibberellin4.04E-02
119GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.04E-02
120GO:0009617: response to bacterium4.23E-02
121GO:0016567: protein ubiquitination4.39E-02
122GO:0071555: cell wall organization4.84E-02
123GO:0006979: response to oxidative stress4.87E-02
RankGO TermAdjusted P value
1GO:0008419: RNA lariat debranching enzyme activity0.00E+00
2GO:0009922: fatty acid elongase activity8.32E-06
3GO:0090440: abscisic acid transporter activity7.07E-05
4GO:0090422: thiamine pyrophosphate transporter activity7.07E-05
5GO:0016629: 12-oxophytodienoate reductase activity1.70E-04
6GO:0008883: glutamyl-tRNA reductase activity1.70E-04
7GO:0001047: core promoter binding1.70E-04
8GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.70E-04
9GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.79E-04
10GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.79E-04
11GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.79E-04
12GO:0004722: protein serine/threonine phosphatase activity2.73E-04
13GO:0004383: guanylate cyclase activity2.86E-04
14GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.86E-04
15GO:0035250: UDP-galactosyltransferase activity4.15E-04
16GO:0052656: L-isoleucine transaminase activity4.15E-04
17GO:0052654: L-leucine transaminase activity4.15E-04
18GO:0004351: glutamate decarboxylase activity4.15E-04
19GO:0052655: L-valine transaminase activity4.15E-04
20GO:0001653: peptide receptor activity4.15E-04
21GO:0005432: calcium:sodium antiporter activity4.15E-04
22GO:0004084: branched-chain-amino-acid transaminase activity5.53E-04
23GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.00E-04
24GO:0008381: mechanically-gated ion channel activity7.00E-04
25GO:0016621: cinnamoyl-CoA reductase activity1.19E-03
26GO:0015491: cation:cation antiporter activity1.37E-03
27GO:0004564: beta-fructofuranosidase activity1.37E-03
28GO:0005267: potassium channel activity1.56E-03
29GO:0004575: sucrose alpha-glucosidase activity1.97E-03
30GO:0044212: transcription regulatory region DNA binding2.30E-03
31GO:0019888: protein phosphatase regulator activity2.88E-03
32GO:0000175: 3'-5'-exoribonuclease activity2.88E-03
33GO:0003712: transcription cofactor activity3.37E-03
34GO:0004842: ubiquitin-protein transferase activity3.76E-03
35GO:0004540: ribonuclease activity4.44E-03
36GO:0015297: antiporter activity4.55E-03
37GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.73E-03
38GO:0018024: histone-lysine N-methyltransferase activity5.62E-03
39GO:0004402: histone acetyltransferase activity5.93E-03
40GO:0010181: FMN binding6.56E-03
41GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.09E-02
42GO:0015238: drug transmembrane transporter activity1.17E-02
43GO:0050661: NADP binding1.46E-02
44GO:0051287: NAD binding1.82E-02
45GO:0046872: metal ion binding1.82E-02
46GO:0031625: ubiquitin protein ligase binding2.11E-02
47GO:0043565: sequence-specific DNA binding2.69E-02
48GO:0016758: transferase activity, transferring hexosyl groups2.91E-02
49GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.17E-02
50GO:0030170: pyridoxal phosphate binding3.19E-02
51GO:0005516: calmodulin binding3.61E-02
52GO:0008194: UDP-glycosyltransferase activity4.04E-02
53GO:0003700: transcription factor activity, sequence-specific DNA binding4.38E-02
54GO:0008168: methyltransferase activity4.95E-02
RankGO TermAdjusted P value
1GO:0032039: integrator complex0.00E+00
2GO:0009331: glycerol-3-phosphate dehydrogenase complex4.15E-04
3GO:0000178: exosome (RNase complex)7.00E-04
4GO:0031463: Cul3-RING ubiquitin ligase complex8.57E-04
5GO:0000159: protein phosphatase type 2A complex2.41E-03
6GO:0000790: nuclear chromatin5.62E-03
7GO:0005770: late endosome6.24E-03
8GO:0005694: chromosome7.56E-03
9GO:0005778: peroxisomal membrane8.61E-03
10GO:0000932: P-body9.34E-03
11GO:0031902: late endosome membrane1.50E-02
12GO:0005634: nucleus1.63E-02
13GO:0009706: chloroplast inner membrane2.53E-02
14GO:0046658: anchored component of plasma membrane4.55E-02
<
Gene type



Gene DE type