gene detail

Gene description

TAIR ID: AT3G01120

Short description: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Pathogen responsiveness: -1.48

General responsiveness: -1.51

Orthologous

Rice:

OS10G0399200 OS10G0517500

Maize:

GRMZM2G113873

Wheat:

TAAFFX.64704.1.S1_AT TAAFFX.92029.1.A1_AT

GO biological process

selenium compound metabolic process, methionine biosynthetic process

GO cellular component

chloroplast stroma, chloroplast

GO molecular function

cystathionine gamma-synthase activity, pyridoxal phosphate binding

Protein domain

Pfam	PF01053, Cys/Met metabolism PLP-dependent enzyme

Metabolic pathway

PWY-702: methionine biosynthesis II
PWY-724: superpathway of lysine, threonine and methionine biosynthesis II
PWY-6936: seleno-amino acid biosynthesis

KEGG pathway

PATH:ath01230: Biosynthesis of amino acids
PATH:ath00920: Sulfur metabolism
PATH:ath00270: Cysteine and methionine metabolism
PATH:ath00450: Selenocompound metabolism

Transcriptional regulation

Regulator:
AT5G61420, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.52	4.49E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.54	4.28E-12
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.62	3.37E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.95	3.95E-14
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.58	2.55E-10